Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq18779 102 8e-17 seq2143 102 8e-17 seq20086 89.7 5e-13 seq17194 89.7 5e-13 seq10467 89.7 5e-13 seq6376 89.7 5e-13 seq5238 89.7 5e-13 seq1293 89.7 5e-13 >seq18779 Length=42783 Score = 102 bits (112), Expect = 8e-17 Identities = 156/221 (71%), Gaps = 1/221 (0%) Strand=Plus/Minus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261 ||| || |||| || ||||| || || |||||||| || || | || || |||||| Sbjct 12665 AACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCACTAAGGGTTCTTCCGTCTTC 12606 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 |||||| || ||||| |||| || | ||| |||||||| || || ||||| ||||| Sbjct 12605 GAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTG 12546 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 || || || | | ||| | ||||| | ||| || || || | ||| | ||||| Sbjct 12545 GATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACGTCCAAAGTGATGGTCTT 12486 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCATAGCTTATGTTT 137422 ||| || | || || ||||| |||||||| | |||| ||| Sbjct 12485 GCCTGTGAGGGTCTTAACGAAGATTTGCAT-GTTTATTTTT 12446 >seq2143 Length=26640 Score = 102 bits (112), Expect = 8e-17 Identities = 156/221 (71%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261 ||| || |||| || ||||| || || |||||||| || || | || || |||||| Sbjct 6516 AACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCACTAAGGGTTCTTCCGTCTTC 6575 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 |||||| || ||||| |||| || | ||| |||||||| || || ||||| ||||| Sbjct 6576 GAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTG 6635 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 || || || | | ||| | ||||| | ||| || || || | ||| | ||||| Sbjct 6636 GATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACGTCCAAAGTGATGGTCTT 6695 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCATAGCTTATGTTT 137422 ||| || | || || ||||| |||||||| | |||| ||| Sbjct 6696 GCCTGTGAGGGTCTTAACGAAGATTTGCAT-GTTTATTTTT 6735 >seq20086 Length=32257 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || ||||||||||| ||||||||||| || || || |||||| | | || ||| Sbjct 22168 GTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCA 22109 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||| || | || ||||| || || || ||||||||||| ||| || || Sbjct 22108 GCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTA 22049 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | ||| | || || | || ||||| |||| ||| | ||||| |||||||| || Sbjct 22048 ACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTC 21989 Query 137395 TTTACGAATATTTGCAT 137411 || ||||| || | ||| Sbjct 21988 TTGACGAAGATCTACAT 21972 >seq17194 Length=120762 Score = 89.7 bits (98), Expect = 5e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 ||||| || ||||| |||||||| ||||||| || || |||||| ||||||||||| Sbjct 43855 GTAGACTCCTTTTGGATGTTGTAGTCGCTCAAAGTTCTGCCGTCTTCAAGTTGTTTACCG 43914 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 || |||| || | ||| |||||||| || || ||||| ||||| Sbjct 43915 GCGAAGATGAGTCTTTGTTGATCGGGTGGAATACCTTCCTTGTC 43958 >seq10467 Length=17661 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || ||||||||||| ||||||||||| || || || |||||| | | || ||| Sbjct 3807 GTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCA 3748 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||| || | || ||||| || || || ||||||||||| ||| || || Sbjct 3747 GCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTA 3688 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | ||| | || || | || ||||| |||| ||| | ||||| |||||||| || Sbjct 3687 ACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTC 3628 Query 137395 TTTACGAATATTTGCAT 137411 || ||||| || | ||| Sbjct 3627 TTGACGAAGATCTACAT 3611 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || ||||||||||| ||||||||||| || || || |||||| | | || ||| Sbjct 13847 GTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCA 13906 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||| || | || ||||| || || || ||||||||||| ||| || || Sbjct 13907 GCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTA 13966 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | ||| | || || | || ||||| |||| ||| | ||||| |||||||| || Sbjct 13967 ACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTC 14026 Query 137395 TTTACGAATATTTGCAT 137411 || ||||| || | ||| Sbjct 14027 TTGACGAAGATCTACAT 14043 >seq6376 Length=13110 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || ||||||||||| ||||||||||| || || || |||||| | | || ||| Sbjct 12205 GTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCA 12146 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||| || | || ||||| || || || ||||||||||| ||| || || Sbjct 12145 GCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTA 12086 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | ||| | || || | || ||||| |||| ||| | ||||| |||||||| || Sbjct 12085 ACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTC 12026 Query 137395 TTTACGAATATTTGCAT 137411 || ||||| || | ||| Sbjct 12025 TTGACGAAGATCTACAT 12009 >seq5238 Length=45295 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || ||||||||||| ||||||||||| || || || |||||| | | || ||| Sbjct 22016 GTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCA 21957 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||| || | || ||||| || || || ||||||||||| ||| || || Sbjct 21956 GCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTA 21897 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | ||| | || || | || ||||| |||| ||| | ||||| |||||||| || Sbjct 21896 ACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTC 21837 Query 137395 TTTACGAATATTTGCAT 137411 || ||||| || | ||| Sbjct 21836 TTGACGAAGATCTACAT 21820 >seq1293 Length=7053 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || ||||||||||| ||||||||||| || || || |||||| | | || ||| Sbjct 6494 GTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCA 6435 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||| || | || ||||| || || || ||||||||||| ||| || || Sbjct 6434 GCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTA 6375 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | ||| | || || | || ||||| |||| ||| | ||||| |||||||| || Sbjct 6374 ACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTC 6315 Query 137395 TTTACGAATATTTGCAT 137411 || ||||| || | ||| Sbjct 6314 TTGACGAAGATCTACAT 6298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488386933104000