Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq20345 86.0 1e-11 seq1030 86.0 1e-11 >seq20345 Length=17406 Score = 86.0 bits (94), Expect = 1e-11 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 49002 TTTTCGAATATGATTTGAGCTATTCTATCACCCTTGGATACATTAAATGGTATAGAACTG 49061 ||||||| || | |||||| | |||||| || | ||| | || || | |||| Sbjct 7887 TTTTCGATGATAAGTTGAGCAACTCTATCGCCAACGCTTACTTAGAAGTCTACATCACTG 7828 Query 49062 AAATTAAATAATAGAACACCTACGTTACCTCTATAGTCTGAGTCAATTACACCAGCACCT 49121 || ||||| | ||| || ||| | ||||||||||| | || || |||||||| || Sbjct 7827 AAGTTAAAGAGTAGCACCTTTACTTCCCCTCTATAGTCAGCATCGATCACACCAGCTCCC 7768 Query 49122 ACGTCTATAAAATAATTATAAGCAAGCCCTGATCTAGGAGCTATTCTACCGTAGT 49176 || || || |||| || |||||| ||||||||||| || ||||| || |||| Sbjct 7767 ACATCAATGAAATTCTTTGCAGCAAGTCCTGATCTAGGTGCAATTCTTCCATAGT 7713 >seq1030 Length=88037 Score = 86.0 bits (94), Expect = 1e-11 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 49002 TTTTCGAATATGATTTGAGCTATTCTATCACCCTTGGATACATTAAATGGTATAGAACTG 49061 ||||||| || | |||||| | |||||| || | ||| | || || | |||| Sbjct 65584 TTTTCGATGATAAGTTGAGCAACTCTATCGCCAACGCTTACTTAGAAGTCTACATCACTG 65643 Query 49062 AAATTAAATAATAGAACACCTACGTTACCTCTATAGTCTGAGTCAATTACACCAGCACCT 49121 || ||||| | ||| || ||| | ||||||||||| | || || |||||||| || Sbjct 65644 AAGTTAAAGAGTAGCACCTTTACTTCCCCTCTATAGTCAGCATCGATCACACCAGCTCCC 65703 Query 49122 ACGTCTATAAAATAATTATAAGCAAGCCCTGATCTAGGAGCTATTCTACCGTAGT 49176 || || || |||| || |||||| ||||||||||| || ||||| || |||| Sbjct 65704 ACATCAATGAAATTCTTTGCAGCAAGTCCTGATCTAGGTGCAATTCTTCCATAGT 65758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903120753299200