Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq18779 105 6e-18 seq2143 105 6e-18 >seq18779 Length=42783 Score = 105 bits (116), Expect = 6e-18 Identities = 123/165 (75%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| ||||| |||||||| ||| | ||||| | || || ||||| ||||| |||||||| Sbjct 12611 GTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTT 12552 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | ||||| | |||||| ||||| | |||| Sbjct 12551 GTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACGTCCAAAGTGAT 12492 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGGCTTATTT 133669 ||| ||||| || || || || ||||| || ||||| | |||||| Sbjct 12491 GGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCAT-GTTTATTT 12448 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || || ||||| || || ||||||| | || || ||||| ||||| ||||||||| Sbjct 13066 TCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCCTTG 13007 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||||| ||||| | ||||| || || | ||||| ||||| | ||||| | Sbjct 13006 TCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCGACGTCCAAGGTGATG 12947 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| || || || ||||| || ||||| Sbjct 12946 GTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 12912 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| || || || ||||| ||| || || ||| || || ||||| || Sbjct 13336 GTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTGCCGTCTTCAAGTTGCTTACCA 13277 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || | || || ||||| ||||| ||||||||||| |||||| ||| Sbjct 13276 GCGAAGATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTGTCCTAGATCTTGGCCTTC 13217 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| ||||| | ||||| || |||| ||||| ||| || ||||| || || Sbjct 13216 ACGTTTTCAATGGTGTCTGATGGCTCAACATCGAGGGTGATGGTCTTTCCGGTAAGGGTC 13157 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 13156 TTGACGAAGATTTGCAT 13140 >seq2143 Length=26640 Score = 105 bits (116), Expect = 6e-18 Identities = 123/165 (75%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| ||||| |||||||| ||| | ||||| | || || ||||| ||||| |||||||| Sbjct 6570 GTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTT 6629 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | ||||| | |||||| ||||| | |||| Sbjct 6630 GTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACGTCCAAAGTGAT 6689 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATGGCTTATTT 133669 ||| ||||| || || || || ||||| || ||||| | |||||| Sbjct 6690 GGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCAT-GTTTATTT 6733 Score = 86.0 bits (94), Expect = 6e-12 Identities = 138/197 (70%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| || || || ||||| ||| || || ||| || || ||||| || Sbjct 5815 GTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTGCCGTCTTCAAGTTGCTTACCA 5874 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || | || || ||||| ||||| ||||||||||| |||||| ||| Sbjct 5875 GCGAAGATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTGTCCTAGATCTTGGCCTTC 5934 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| ||||| | ||||| || |||| ||||| ||| || ||||| || || Sbjct 5935 ACGTTTTCAATGGTGTCTGATGGCTCAACATCGA-GGTGATGGTCTTTCCGGTAAGGGTC 5993 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 5994 TTGACGAAGATTTGCAT 6010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483265380212800