Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1748 120 7e-22 seq17288 114 3e-20 seq17424 95.1 3e-14 seq2313 93.3 1e-13 seq1318 84.2 5e-11 seq979 84.2 5e-11 >seq1748 Length=94692 Score = 120 bits (132), Expect = 7e-22 Identities = 180/255 (71%), Gaps = 3/255 (1%) Strand=Plus/Plus Query 110675 TTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCA 110734 ||||| |||| | |||||||||||| || ||||| ||||| |||| ||| ||| || | Sbjct 39728 TTCAAATGGATTGATTCCAATGTTAAAGGTTTTCAATGACACCGCAAGATACGTGGATTA 39787 Query 110735 AGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATAT 110791 ||||||| || ||||| || | || ||| ||||| | ||||| ||||| | ||||| Sbjct 39788 AGGTGGTGGAAAAAGAAAGGGAGCTTTCGCTGTCTATGTTGAACCATGGCACGCTGATAT 39847 Query 110792 ATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTT 110851 | || ||| | |||| | || ||||| || ||||| | ||||| | || | Sbjct 39848 CTACGACTTCCTTTAACTCAGAAAGAATCACGGTAAGGAAGAGAATAGAGCTAGAGACCT 39907 Query 110852 ATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTG 110911 || || || | |||| | ||||| | ||||||| | | ||| ||| ||||| || Sbjct 39908 TTTCTACGCTCTTTGGACTCCAGATCTTTTCATGAGAAGAGTTGAAGCAAATGAAGATTG 39967 Query 110912 GTCTCTTATGTGTCC 110926 | |||| |||||||| Sbjct 39968 GACTCTCATGTGTCC 39982 >seq17288 Length=143976 Score = 114 bits (126), Expect = 3e-20 Identities = 150/207 (72%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 131801 AAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGA 131860 ||||| || |||||||| ||||| |||||| | ||| ||||| || || ||| Sbjct 116776 AAGAAGGCTGAATGGGCCATTAAGTGGATT---GGTGAGAGCGCTAGCTTCGCTGAGAGA 116832 Query 131861 CTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTT 131920 || | ||||| ||| | | || || || ||||| ||||| | ||||| | ||||| Sbjct 116833 CTAATTGCTTTCGCTGCTATCGAGGGCATCTTCTTCTCAGGATCCTTCTGCTCAATCTTC 116892 Query 131921 TGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGA 131980 ||||||||||||||||| | ||||| || ||| | || || ||| | |||| || ||| Sbjct 116893 TGGCTTAAGAAGCGTGGCCTCATGCCAGGTCTCACCTTCTCAAATGAGCTCATTTCAAGA 116952 Query 131981 GATGAAGCATTGCATACTGAATTTGCT 132007 || |||| |||| ||||| |||||| Sbjct 116953 GACGAAGGTATGCACACTGACTTTGCT 116979 >seq17424 Length=159384 Score = 95.1 bits (104), Expect = 3e-14 Identities = 116/157 (74%), Gaps = 6/157 (4%) Strand=Plus/Plus Query 305334 TGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTAT 305393 ||||||| |||||||| | |||| | | || || |||||||||| || | ||| Sbjct 93044 TGTTCAACAGGCAACCTAGTTTACATAGAGTCTCAATTATGGCTCATAGAGCAAGAGTTA 93103 Query 305394 T---ATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATT 305450 | ||| || || || |||| || | | | | |||||| ||||||||||| |||| Sbjct 93104 TGCCATCAAGA---ACTTTAAGATTTAACGAATGCGTTTGTACTCCTTATAATGCAGATT 93160 Query 305451 TTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 ||||||| |||||||||||||| ||| ||||| |||| Sbjct 93161 TTGATGGTGATGAAATGAATATACATTTACCTTAATC 93197 >seq2313 Length=92375 Score = 93.3 bits (102), Expect = 1e-13 Identities = 118/161 (73%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 || |||||||| ||||| || | |||| | | || || |||||||||| | | | Sbjct 58496 GTACTGTTCAACAGGCAGCCTAGTTTACATAGAGTCTCAATTATGGCTCATAGGGCAAGA 58437 Query 305390 GTATT---ATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCG 305446 || || ||| || || || |||| |||| | ||| |||||| ||||||||||| Sbjct 58436 GTTTTGCCATCAAGA---ACTTTGAGATTCAATGAATGTGTTTGTACTCCTTATAATGCA 58380 Query 305447 GATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 |||||||||| || ||||||||||| ||| ||||| |||| Sbjct 58379 TATTTTGATGGTGAGGAAATGAATATACATTTACCTTAATC 58339 >seq1318 Length=78993 Score = 84.2 bits (92), Expect = 5e-11 Identities = 116/161 (72%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 || |||||||| ||||| || | |||| | | || || ||||||||| | | | Sbjct 70000 GTACTGTTCAACAGGCAGCCTAGTTTACATAGAGTCTCAATTATGGCTCATGGGGCAAGA 69941 Query 305390 GTATT---ATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCG 305446 || | ||| || || || |||| |||| | ||| |||||| ||||||||||| Sbjct 69940 GTTATGCCATCAAGA---ACTTTGAGATTCAATGAATGTGTTTGTACTCCTTATAATGCA 69884 Query 305447 GATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 |||||||||| || ||||||||||| ||| ||||| |||| Sbjct 69883 TATTTTGATGGTGAGGAAATGAATATACATTTACCTTAATC 69843 >seq979 Length=120341 Score = 84.2 bits (92), Expect = 5e-11 Identities = 176/261 (67%), Gaps = 20/261 (8%) Strand=Plus/Minus Query 304889 CAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCTCAA 304948 |||||| || |||| ||| | ||||||||||||||| || || || | || || Sbjct 79664 CAATATTATGTTGCTACAGTGATGGATAATGAAATTTAAGGG--TAACCA---ACCTAAA 79610 Query 304949 AG-----ATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTC 305003 || |||||| | || ||||| | |||| | | | ||| ||| ||||| |||| Sbjct 79609 AGCACAAATCTGGAAAGCCCTTAAAAGCTATTCGTTCAAGACTTAGAGGAAAAGAAGGTC 79550 Query 305004 GTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACAC 305063 || |||| || ||||||||||| || | || ||||| ||| | | ||| || |||| Sbjct 79549 GTCTTCGTGGCAATCTAATGGGTAAGAGAGTCGATTTCTCTGCTCGTACTGTCATTACAC 79490 Query 305064 CTG-----ATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAA 305118 | | ||||||| ||||| || || | || || || ||||||| |||| Sbjct 79489 CAGATCCCATTCTCAGATTAG-----ATCAACTTGGTGTACCGCAACAAATTGCACTAAA 79435 Query 305119 ACTAACATTTCCAGAGAAAGT 305139 || ||| |||| |||| ||| Sbjct 79434 TCTGACAGTTCCCGAGACAGT 79414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186421700676920