Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq18779 114 3e-20 seq2143 114 3e-20 seq10467 113 1e-19 seq6376 113 1e-19 seq5238 113 1e-19 seq1293 113 1e-19 seq20086 111 4e-19 seq17194 98.7 2e-15 >seq18779 Length=42783 Score = 114 bits (126), Expect = 3e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || |||||||| || || ||||||||||| || || |||||||| ||||| Sbjct 12471 AAGACCCTCACAGGCAAGACCATCACTTTGGACGTTGAGCCCTCTGACACCATCGAAAAT 12530 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || |||||||| || || |||||||| |||||| Sbjct 12531 GTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGATCAACAAAGACTCATCTTC 12590 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| | ||||| ||||| || | || |||||| ||||||| || || Sbjct 12591 GCTGGCAAGCAACTCGAAGACGGAAGAACCCTTAGTGACTACAACATCCAGAAGGAATCA 12650 Query 206365 ACTCTTCACCTTGTTTTGAGACT 206387 || |||||| | ||| | ||||| Sbjct 12651 ACCCTTCACTTGGTTCTCAGACT 12673 Score = 91.5 bits (100), Expect = 3e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || || ||||| || ||||| | || || || || ||||| | ||| Sbjct 13154 CAAGACCCTTACCGGAAAGACCATCACCCTCGATGTTGAGCCATCAGACACCATTGAAAA 13213 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| | || || ||||| || || || |||||||||||||| Sbjct 13214 CGTGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATCAACAAAGACTTATCTT 13273 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || ||||| | ||||| || || || ||| |||| |||||| |||| || ||||| Sbjct 13274 CGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACAACATCCAAAAGGAGTC 13333 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||| ||| | || | |||||| || Sbjct 13334 AACTCTCCACTTGGTCCTCAGACTTAGA 13361 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| ||||| || |||||| | || || || || ||||| | ||| Sbjct 12699 AAGACCCTCACTGGAAAGACCATCACTCTTGATGTTGAGCCATCAGACACTATTGAAAAC 12758 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || ||||| ||| || || |||||||| || || Sbjct 12759 GTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCCGATCAACAAAGACTCATTTTT 12818 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || |||||||| | ||||||||||| || | || |||||| |||| || ||||| Sbjct 12819 GCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAACATCCAAAAGGAGTCA 12878 Query 206365 ACTCTTCAC 206373 || |||||| Sbjct 12879 ACCCTTCAC 12887 Score = 86.0 bits (94), Expect = 1e-11 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || || ||||| || ||||| ||||| || || ||| || || | || Sbjct 12926 CAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGAGCCTTCAGATACCATTGAGAA 12985 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| |||||| ||||| || ||||| || || || |||||||| || || Sbjct 12986 TGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAACAAAGACTCATTTT 13045 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || |||||||| | ||||||||||| || | || |||||| |||| || ||||| Sbjct 13046 TGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAACATCCAAAAGGAGTC 13105 Query 206364 TACTCTTCAC 206373 || |||||| Sbjct 13106 AACCCTTCAC 13115 >seq2143 Length=26640 Score = 114 bits (126), Expect = 3e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || |||||||| || || ||||||||||| || || |||||||| ||||| Sbjct 6710 AAGACCCTCACAGGCAAGACCATCACTTTGGACGTTGAGCCCTCTGACACCATCGAAAAT 6651 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || |||||||| || || |||||||| |||||| Sbjct 6650 GTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGATCAACAAAGACTCATCTTC 6591 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| | ||||| ||||| || | || |||||| ||||||| || || Sbjct 6590 GCTGGCAAGCAACTCGAAGACGGAAGAACCCTTAGTGACTACAACATCCAGAAGGAATCA 6531 Query 206365 ACTCTTCACCTTGTTTTGAGACT 206387 || |||||| | ||| | ||||| Sbjct 6530 ACCCTTCACTTGGTTCTCAGACT 6508 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || || ||||| || ||||| | | | || || || ||||| | ||| Sbjct 5996 CAAGACCCTTACCGGAAAGACCATCACCTCG-ATGTTGAGCCATCAGACACCATTGAAAA 5938 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| | || || ||||| || || || |||||||||||||| Sbjct 5937 CGTGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATCAACAAAGACTTATCTT 5878 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || ||||| | ||||| || || || ||| |||| |||||| |||| || ||||| Sbjct 5877 CGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACAACATCCAAAAGGAGTC 5818 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||| ||| | || | |||||| || Sbjct 5817 AACTCTCCACTTGGTCCTCAGACTTAGA 5790 >seq10467 Length=17661 Score = 113 bits (124), Expect = 1e-19 Identities = 156/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||||| ||| || ||| || | || || || || || ||| | || || || Sbjct 3608 AAAATGTA---GATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAG 3664 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 |||||| || ||||| || ||| ||||||||||| |||||||| ||| || Sbjct 3665 CCTTCTGATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCT 3724 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 || || ||||| ||||| || |||||| |||||||||| || || || ||| | ||| Sbjct 3725 GATCAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGAT 3784 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTT 206381 |||||| |||| ||||| || ||||| ||| | || || Sbjct 3785 TACAACATCCAAAAAGAATCAACTCTCCACTTGGTCTT 3822 Score = 113 bits (124), Expect = 1e-19 Identities = 156/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||||| ||| || ||| || | || || || || || ||| | || || || Sbjct 14046 AAAATGTA---GATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAG 13990 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 |||||| || ||||| || ||| ||||||||||| |||||||| ||| || Sbjct 13989 CCTTCTGATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCT 13930 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 || || ||||| ||||| || |||||| |||||||||| || || || ||| | ||| Sbjct 13929 GATCAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGAT 13870 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTT 206381 |||||| |||| ||||| || ||||| ||| | || || Sbjct 13869 TACAACATCCAAAAAGAATCAACTCTCCACTTGGTCTT 13832 >seq6376 Length=13110 Score = 113 bits (124), Expect = 1e-19 Identities = 156/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||||| ||| || ||| || | || || || || || ||| | || || || Sbjct 12006 AAAATGTA---GATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAG 12062 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 |||||| || ||||| || ||| ||||||||||| |||||||| ||| || Sbjct 12063 CCTTCTGATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCT 12122 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 || || ||||| ||||| || |||||| |||||||||| || || || ||| | ||| Sbjct 12123 GATCAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGAT 12182 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTT 206381 |||||| |||| ||||| || ||||| ||| | || || Sbjct 12183 TACAACATCCAAAAAGAATCAACTCTCCACTTGGTCTT 12220 >seq5238 Length=45295 Score = 113 bits (124), Expect = 1e-19 Identities = 156/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||||| ||| || ||| || | || || || || || ||| | || || || Sbjct 21817 AAAATGTA---GATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAG 21873 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 |||||| || ||||| || ||| ||||||||||| |||||||| ||| || Sbjct 21874 CCTTCTGATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCT 21933 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 || || ||||| ||||| || |||||| |||||||||| || || || ||| | ||| Sbjct 21934 GATCAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGAT 21993 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTT 206381 |||||| |||| ||||| || ||||| ||| | || || Sbjct 21994 TACAACATCCAAAAAGAATCAACTCTCCACTTGGTCTT 22031 >seq1293 Length=7053 Score = 113 bits (124), Expect = 1e-19 Identities = 156/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||||| ||| || ||| || | || || || || || ||| | || || || Sbjct 6295 AAAATGTA---GATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAG 6351 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 |||||| || ||||| || ||| ||||||||||| |||||||| ||| || Sbjct 6352 CCTTCTGATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCT 6411 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 || || ||||| ||||| || |||||| |||||||||| || || || ||| | ||| Sbjct 6412 GATCAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGAT 6471 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTT 206381 |||||| |||| ||||| || ||||| ||| | || || Sbjct 6472 TACAACATCCAAAAAGAATCAACTCTCCACTTGGTCTT 6509 >seq20086 Length=32257 Score = 111 bits (122), Expect = 4e-19 Identities = 151/210 (72%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||||| ||| || ||| || | || || || || || ||| | || || || Sbjct 21969 AAAATGTA---GATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAG 22025 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 |||||| || ||||| || ||| ||||||||||| |||||||| ||| || Sbjct 22026 CCTTCTGATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCT 22085 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 || || ||||| ||||| || |||||| |||||||||| || || || ||| | ||| Sbjct 22086 GATCAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGAT 22145 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 |||||| |||| ||||| || ||||| ||| Sbjct 22146 TACAACATCCAAAAAGAATCAACTCTCCAC 22175 >seq17194 Length=120762 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| ||||| ||||| || || || ||||| || ||||| ||||| Sbjct 44704 AAGATCCAAGACAAAGAGGGAATCCCACCCGATCAACAGAGACTCATTTTCGCTGGAAAA 44645 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||||||||||| || || || | |||| |||||| ||||||| ||||| || |||||| Sbjct 44644 CAGTTGGAAGACGGCAGAACCCTCTCCGACTACAACATCCAGAAGGAGTCAACCCTTCAC 44585 Query 206374 CTTGTTTTGAGACT 206387 | || |||||||| Sbjct 44584 TTGGTCTTGAGACT 44571 Score = 91.5 bits (100), Expect = 3e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||| ||| || || |||||||| ||||||||||| || Sbjct 43967 AAGATCCAGGACAAGGAAGGTATTCCACCCGATCAACAAAGACTCATCTTCGCCGGTAAA 43908 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || | ||||| || || |||||| ||| |||||| |||| || ||||||||||| ||| Sbjct 43907 CAACTTGAAGACGGCAGAACTTTGAGCGACTACAACATCCAAAAGGAGTCTACTCTCCAC 43848 Query 206374 CTTGTTTTGAGACTTCGA 206391 | || | |||||| || Sbjct 43847 TTGGTCCTCAGACTTAGA 43830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181431345728120