Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq18779 111 1e-19 seq2143 98.7 9e-16 seq17194 93.3 4e-14 >seq18779 Length=42783 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | |||||||| | ||||| | || ||||| ||| | Sbjct 12912 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGA-GCCTTC 12970 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || ||| | || || ||| || || || || ||||| || |||||||| Sbjct 12971 AGATACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCACCCGATCA 13030 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||||||||||||| | || || ||||| ||||||| |||| | || || ||||| Sbjct 13031 ACAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAA 13090 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||| || || ||| |||| || || | ||||||||||| || Sbjct 13091 CATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGG 13138 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | || ||||| | ||||| | || || || |||| | Sbjct 12684 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTCTTGATGTTGA-GCCATC 12742 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||| || | || || || || ||||| || ||||| || |||||||| Sbjct 12743 AGACACTATTGAAAACGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCCGATCA 12802 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||||||||||||| | || || ||||| ||||||| |||| | || || ||||| Sbjct 12803 ACAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAA 12862 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||| || || ||| |||| || || | ||||||||||| || Sbjct 12863 CATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGG 12910 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 ||||||||| | || || || || | || || || | ||||| | || || || || Sbjct 12453 AACATGCAAATCTTCGTTAAGACCCTCACAGGCAAGACCATCACTTTGGACGTTGAGCCC 12512 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 || || ||||| | || || || || || || || || || || |||||| Sbjct 12513 TCTGACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGAT 12572 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 || ||||||||||| | || ||||| ||||||||||| | |||| | || || ||| Sbjct 12573 CAACAAAGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCCTTAGTGACTAC 12632 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || || || ||||| ||| |||| || || | ||| | |||||||| Sbjct 12633 AACATCCAGAAGGAATCAACCCTTCACTTGGTTCTCAGACTCAGAGGAGG 12682 >seq2143 Length=26640 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 ||||| || ||||| || |||||||| ||||||||||||| | || || ||||| ||| Sbjct 6145 GATAAGGAAGGTATTCCCCCCGATCAACAAAGACTCATTTTTGCTGGAAAGCAACTTGAA 6086 Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 |||| |||| | || || ||||| || ||||| || || ||| |||| || || | Sbjct 6085 GATGGAAGAACCCTTAGTGACTACAACATCCAAAAGGAGTCAACCCTTCACTTGGTCCTC 6026 Query 25388 AGATTGAGAGGAGG 25401 ||||||||||| || Sbjct 6025 AGATTGAGAGGTGG 6012 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 ||||||||| | || || || || | || || || | ||||| | || || || || Sbjct 6728 AACATGCAAATCTTCGTTAAGACCCTCACAGGCAAGACCATCACTTTGGACGTTGAGCCC 6669 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 || || ||||| | || || || || || || || || || || |||||| Sbjct 6668 TCTGACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGAT 6609 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 || ||||||||||| | || ||||| ||||||||||| | |||| | || || ||| Sbjct 6608 CAACAAAGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCCTTAGTGACTAC 6549 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || || || ||||| ||| |||| || || | ||| | |||||||| Sbjct 6548 AACATCCAGAAGGAATCAACCCTTCACTTGGTTCTCAGACTCAGAGGAGG 6499 >seq17194 Length=120762 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 || || || ||||| || |||||||| ||||||||||| | || ||| |||||||| ||| Sbjct 43958 GACAAGGAAGGTATTCCACCCGATCAACAAAGACTCATCTTCGCCGGTAAACAACTTGAA 43899 Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 || | |||| | | ||||| ||||| || ||||| || || || | || || || | Sbjct 43898 GACGGCAGAACTTTGAGCGACTACAACATCCAAAAGGAGTCTACTCTCCACTTGGTCCTC 43839 Query 25388 AGATTGAGAGGAGGAAAATGATCA 25411 ||| | ||||| || ||||| || Sbjct 43838 AGACTTAGAGGTGGTCAATGAACA 43815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444951302150400