Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1748 210 3e-49 seq17288 113 6e-20 >seq1748 Length=94692 Score = 210 bits (232), Expect = 3e-49 Identities = 504/751 (67%), Gaps = 16/751 (2%) Strand=Plus/Minus Query 69091 GCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCA 69150 |||||||| ||||| | || ||||| || || ||||| ||||| ||||||| || | Sbjct 40459 GCATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGTGTCTAAGATTTGAATTTCTA 40400 Query 69151 GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACT 69210 ||||| |||| |||||| ||||| |||||||||||||||| ||||| | | || | || Sbjct 40399 GCTTCAGGAACAGGATAGTAATTGTTATCTATAATTTTATTTAGATT-CTTAGTAATTCT 40341 Query 69211 -TTAACCACGTCCTTTAGTTTGAGAAAATCAAAT-CGTCCAT---CTATAACA--AACAT 69263 || ||||| | || || | ||||| || | | | || ||||| || | Sbjct 40340 CTTGGTCACGTAATGTAACTTCTCATAATCATATTCTTAGGTTTCCTTTAACACGAATCT 40281 Query 69264 ATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTAT 69323 ||| | || | ||| ||||||||||| || || || |||| | | | | | ||| | Sbjct 40280 ATTTAAAGCAATAGAAGCTAGATTACAGACAGCCACTTCATCTGGACTGGTAAATTCGAC 40221 Query 69324 TATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTT 69383 ||||| || || || ||| || || || || || ||||||| || || ||| | Sbjct 40220 GATCTCAGTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTGGATTTTCT 40161 Query 69384 GTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 || || || || |||||||| ||| | ||||||||||| || | ||||| || || || Sbjct 40160 ATTGCAAGCATCTTTGTAAAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGAT 40101 Query 69444 AGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACG-CTTCTCTT--TTTCATA 69500 | ||| | ||||| || | | |||||| || || | | ||||||| Sbjct 40100 TTAACCCCAGAGCCATCTAGCCTTAA---CAGTCTTGCGACCTCTACCAGTGGTTTCATA 40044 Query 69501 TTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATT 69560 | | || || || || || || ||||| | | | ||| || |||||||| Sbjct 40043 CTCGATGTAAAGTTTCTCAAACTCCTCACCCCATGTAGTAGTAAGTCCTGGGCATTCATT 39984 Query 69561 TGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAAT 69620 ||||||||| | | ||| | |||| | | ||||| | |||| || ||||| ||| | Sbjct 39983 TGGACACATGAGAGTCCAATCTTCATTTGCTTCAACTCTTCTCATGAAAAGATCTGGAGT 39924 Query 69621 CCAAAGAGC-TATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAA 69679 ||||||||| || ||| || ||||| | |||||| ||||| || || ||| ||| | | Sbjct 39923 CCAAAGAGCGTAGAAA-AGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTCTGA 39865 Query 69680 GATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCG 69739 | | || || || ||||||| ||||||||||| | ||| | || | ||||| Sbjct 39864 GTTAAAGGAAGTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCTCCCT 39805 Query 69740 GTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCG 69799 || ||| || || | ||| | |||||| || |||| ||| | || | | ||| | Sbjct 39804 TTCTTTTTCCACCACCTTAATCCACGTATCTTGCGGTGTCATTGAAAACCTTTAACATTG 39745 Query 69800 GAATAATACCATTAGATTTACCATTTGTTCC 69830 |||| | ||||| || | || ||||| || Sbjct 39744 GAATCAATCCATTTGAATATCCGTTTGTACC 39714 >seq17288 Length=143976 Score = 113 bits (124), Expect = 6e-20 Identities = 393/602 (65%), Gaps = 16/602 (3%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| || |||||| || | || || ||||| ||| | || || || || ||||| Sbjct 116982 GCAAGCAAAGTCAGTGTGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAG 116923 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGA 39734 || ||||| || |||||||| || ||||| || || | |||| ||| |||| || |||| Sbjct 116922 ACCTGGCATGAGGCCACGCTTCTTAAGCCAGAAGATTG-AGCAGAAGGATCCTGAGAAGA 116864 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG---TATCATTAT 39791 ||||||| || | || || || |||| |||||||| || | || | | ||| | Sbjct 116863 AGATGCCCTCGATAGCAGCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCGCTCTCACCA- 116805 Query 39792 GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCT-ATAGCA 39850 |||||||| ||||| ||||| ||||| ||||| || | |||| | || || Sbjct 116804 --ATCCACTTAATGGCCCATTCAGCCTTCTTAGTTACAACTGGGA-TGTTAGTGATGGCT 116748 Query 39851 TTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTA--ACAGACTAT 39908 || ||||| | | || || | || | | || || || | || || | Sbjct 116747 TTGAAGAGGAACTCCTTCTCGTGTGGGTCACTGATGAGGGTGTCGATGAGTACTGA--GT 116690 Query 39909 ACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 39968 | | ||||| || ||||| || ||| ||| || || || || ||||| | |||||| | Sbjct 116689 AAGTCTCTGAGTGAATGTTCTCCATCATCATTTGGAAGCCATAGAAACAGCGTGCTTCTG 116630 Query 39969 TAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAG 40028 || ||| | || | ||| ||||| | || | || || || || ||||| || | Sbjct 116629 GAACTTGGATTTCAGTACAGAATCTCTGGGCGAGGTTCTCGTTGACGATTCCGTCTGAGG 116570 Query 40029 CGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCC 40088 | || ||||| || | || || || ||||| | | | || | | | | | | | || Sbjct 116569 CAGCGAAAAAGGCAAGGACGTGCTTGATAAAGTGTCTCTCGTTGTCGTTGAGTCTCTCCC 116510 Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCC-TCTGCC 40147 | || || | || | | | || | ||| |||| ||||| || | ||| |||| Sbjct 116509 AATCCTTAACGTCGGTGGCGAGGTCGATTTCCTCAGAGGTCCAGAAAGCAGCCATCTG-G 116451 Query 40148 TTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGA 40207 | |||||||| ||||| || || || | ||||||| ||||||||||| ||||| Sbjct 116450 TCCTTGTACATCTTCCAGATGTCGTTGTACTTGATTGGAAGGATAACAAATCTGTTTGGG 116391 Query 40208 TT 40209 || Sbjct 116390 TT 116389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686687958820800