Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq5850 84.2 2e-11 >seq5850 Length=9948 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/239 (67%), Gaps = 9/239 (4%) Strand=Plus/Minus Query 19555 ATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGTAAA---- 19610 ||||| || | ||||| | || |||||||| | ||||||||||| || | ||| Sbjct 5025 ATTATCATTTTCGATGAGATCGATGCAATCTGCAGACAAAGAGGTTCAGGAGGAAACTCA 4966 Query 19611 -----TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAAC 19665 |||||| | || || || ||||| ||||||| || || | |||||||| || Sbjct 4965 GGCACAGGAGTAAACGAAACAGTAGTCAACTAACTCCTCTCCAAGATGGACGGTGTGGAC 4906 Query 19666 CAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCC 19725 |||||| || ||| | || || |||||||| || ||| || | || || || Sbjct 4905 TCACTGAACAACATTCTCGTGATAGGCATGACAAACAGAAAAGATATGATTGATGAGGCT 4846 Query 19726 TTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGG 19784 | || |||| ||| | ||||| ||| | | |||||| ||| || ||||| | ||| Sbjct 4845 ATGCTAAGACCTGGTAGATTGGAGATACATTTGGAAATTGGCTTGCCTGATGAGTTTGG 4787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397331412448600