Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq18779 109 5e-19 seq2143 95.1 1e-14 seq17194 87.8 2e-12 >seq18779 Length=42783 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || ||||| || |||||||| || | | | | | ||||| Sbjct 12892 ACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTAAGGGTTCTTCCATCTTCA 12833 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || || || || || ||||||| | |||||||| || || | ||| || ||||| | Sbjct 12832 AGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTTATCTTGG 12773 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| || | | |||| | |||||||| ||||| |||| || ||||| || | || Sbjct 12772 ATCTTGGCCTTGACGTTTTCAATAGTGTCTGATGGCT-CAACATCAAGAGTGATGGTCTT 12714 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 || || || || ||||| |||||||||||| || || Sbjct 12713 TCCAGTGAGGGTCTTCACGAAGATTTGCATACCTCCT 12677 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || ||||| || ||||||||| || | | | ||||||| Sbjct 13348 ACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTGCCGTCTTCA 13289 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || || ||||| ||| | || || | |||||||| || || | ||| || || || | Sbjct 13288 AGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTGTCCTAG 13229 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| |||| | |||| | ||||||| ||||| |||| || || || || | || Sbjct 13228 ATCTTGGCCTTCACGTTTTCAATGGTGTCTGATGGCT-CAACATCGAGGGTGATGGTCTT 13170 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || || || |||||||||||| Sbjct 13169 TCCGGTAAGGGTCTTGACGAAGATTTGCATA 13139 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || |||||||| || | | | | |||||||| Sbjct 12664 ACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCACTAAGGGTTCTTCCGTCTTCG 12605 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || || || || ||| | ||||| | |||||||| || || | || || || || | Sbjct 12604 AGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGG 12545 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | |||| | ||||| | || ||||| || | ||| || | ||| Sbjct 12544 ATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACGTCCAAAGTGATGGTCTTG 12485 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || || ||||||||||| Sbjct 12484 CCTGTGAGGGTCTTAACGAAGATTTGCAT 12456 >seq2143 Length=26640 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/211 (71%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || ||||| || ||||||||| || | | | ||||||| Sbjct 5803 ACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTGCCGTCTTCA 5862 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || || ||||| ||| | || || | |||||||| || || | ||| || || || | Sbjct 5863 AGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTGTCCTAG 5922 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| |||| | |||| | ||||||| ||||| |||| || || || || | || Sbjct 5923 ATCTTGGCCTTCACGTTTTCAATGGTGTCTGATGGCT-CAACATCGAG-GTGATGGTCTT 5980 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || || || |||||||||||| Sbjct 5981 TCCGGTAAGGGTCTTGACGAAGATTTGCATA 6011 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || |||||||| || | | | | |||||||| Sbjct 6517 ACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCACTAAGGGTTCTTCCGTCTTCG 6576 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || || || || ||| | ||||| | |||||||| || || | || || || || | Sbjct 6577 AGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGG 6636 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | |||| | ||||| | || ||||| || | ||| || | ||| Sbjct 6637 ATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACGTCCAAAGTGATGGTCTTG 6696 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || || ||||||||||| Sbjct 6697 CCTGTGAGGGTCTTAACGAAGATTTGCAT 6725 >seq17194 Length=120762 Score = 87.8 bits (96), Expect = 2e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC-ATGTTGCGCTCGTCTTC 27097 ||||| || | ||||| || ||||| || |||||||||||| | ||| || ||||||| Sbjct 43843 ACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTCAAAGTTCTGC-CGTCTTC 43901 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 || |||||||||||| | ||||| | |||||||| || || | ||| || || || Sbjct 43902 AAGTTGTTTACCGGCGAAGATGAGTCTTTGTTGATCGGGTGGAATACCTTCCTTGTCCTG 43961 Query 27158 GATCTTG 27164 ||||||| Sbjct 43962 GATCTTG 43968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424801199000640