Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1748 134 2e-26 seq17288 116 5e-21 >seq1748 Length=94692 Score = 134 bits (148), Expect = 2e-26 Identities = 420/639 (66%), Gaps = 26/639 (4%) Strand=Plus/Minus Query 111482 TCAAACTCCTCACCCACCGCGTCGGAG--AGACCTGGTGCCTTG-TCTGGACAGAAAAGA 111538 ||||||||||||||| | || | || || ||||| || || | |||||| | ||| Sbjct 40027 TCAAACTCCTCACCC--CATGTAGTAGTAAGTCCTGG-GCATTCATTTGGACACATGAGA 39971 Query 111539 GACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAA 111598 | ||| | || | | ||||| | |||||||||| |||||| |||| || | | Sbjct 39970 GTCCAATCTTCATTTGCTTCAACTCTTCTCATGAAAAGATCTGGAGTCCAAAGAGCGTAG 39911 Query 111599 AAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCC 111658 || || |||||| | | |||||| | ||| || || || | | |||||| || Sbjct 39910 AAAAGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTCTGAGTTAAAGGAAGTCG 39851 Query 111659 ATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTC---GACGCCCA 111715 |||||| ||||||||||| |||| |||||| |||| || |||||||| | ||| Sbjct 39850 TAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCTCCCTTTCTTTTTCCACCA 39791 Query 111716 GCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCT 111775 ||| || || || | || ||| | || || || | ||||||||| | |||| | Sbjct 39790 CCTTAATCCACGTATCTTGCGGTGTCATTGAAAACCTTTAACATTGGAATCAATCCATTT 39731 Query 111776 GATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGA---TGTGC 111832 || | || ||||| || | || || | | ||||| ||||| ||| || | Sbjct 39730 GAATATCCGTTTGTACCTCTGATGTAGGAGTCAGCAGCTCTTACATC--GGACACTGAG- 39674 Query 111833 ATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATA 111892 | || ||||| ||||| ||||||||| ||| | | | |||| || | ||| Sbjct 39673 ACTCCGATACCACCAGCAGCCTTTGAGATAATAGCAATTTATTTTAAAGTTTCAAAAATA 39614 Query 111893 CCGTTGATTGAGTCCTCCTT----GTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT 111948 || | || ||||| || || ||| || | ||| ||| |||| ||||| ||| | Sbjct 39613 CCATCAATGGAGTCTTCTTTTACAGTTAGCAAGAAGCAAG-AACT---CATCTAAGGTTT 39558 Query 111949 TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTT 112008 |||||| |||| || || || ||||| || || ||| | ||| ||| |||| Sbjct 39557 TGGTGTTCCAGAGTTAAACAGAGTTGGAGTGGCATGAGTAAACCACAGTTGACTCATCAA 39498 Query 112009 GTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCAT 112068 ||||| ||||| || | || |||| |||||| || || || || || | ||| Sbjct 39497 ATCGTAAGTCTCGAACGCTGACTCAAGGTCTTCTTTATGAATACCAATACTTACTCTCAT 39438 Query 112069 GAACATGTACTGTGGGGTTTCCATGA---GGATGCCATC 112104 | ||||| |||||| | || | || || ||||||| Sbjct 39437 AAGCATGTGCTGTGGTCTCTCAAGGATTTGGTTGCCATC 39399 >seq17288 Length=143976 Score = 116 bits (128), Expect = 5e-21 Identities = 152/207 (73%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | ||| || |||| ||||| || |||||||||||| |||||| Sbjct 116978 GCAAAGTCAGTGTGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGACCT 116919 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 |||||||| || |||||||| | ||| | || | |||||| || || ||||||||||| Sbjct 116918 GGCATGAGGCCACGCTTCTTAAGCCAGAAGATTGAGCAGAAGGATCCTGAGAAGAAGATG 116859 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAG-GAGCGAGACTTTGCATCAAA 122837 ||||| | | || || |||| || | || |||||| |||| || | || ||| Sbjct 116858 CCCTCGATAGCAGCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCG---CTCT-CACCAAT 116803 Query 122838 CCATTTCATTGCCCATTTCGCCTTCTT 122864 ||| || || ||||||| |||||||| Sbjct 116802 CCACTTAATGGCCCATTCAGCCTTCTT 116776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627830087712000