Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1748 199 5e-46 seq17288 122 1e-22 >seq1748 Length=94692 Score = 199 bits (220), Expect = 5e-46 Identities = 733/1126 (65%), Gaps = 49/1126 (4%) Strand=Plus/Plus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCT-ATCTTC--AA 104194 ||||||||| ||| || ||||||||| ||| ||| | || ||||||| | |||| || Sbjct 39339 AGAGACTACAACTATGACTATTTTGGTTTCAGAACATTGGA-AAGAGCTTACCTTCTTAA 39397 Query 104195 CGGCTCGATGGTGTCTTGATG---GAAACCCCACAGTACATGTTCATGCGCGTGGCCATC 104251 | |||| | || || | |||||| ||||| | ||| | || || Sbjct 39398 AG-----ATGGCAACCAAATCCTTGAGAGACCACAGCACATGCTTATGAGAGTAAGTATT 39452 Query 104252 GGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGT 104311 ||||||||| |||||| |||| || | || ||||| ||||| |||| ||| Sbjct 39453 GGTATTCATAAAGAAGACCTTGAGTCAGCGTTCGAGACTTACGATTTGATGAGTCAACTG 39512 Query 104312 ATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCC 104371 ||| | ||| || || ||||| || || || |||| ||||||| ||| | ||| Sbjct 39513 TGGTTTACTCATGCCACTCCAACTCTGTTTAACTCTGGAACACCAAAACCTTAGATG--- 39569 Query 104372 AGTTGCTTCCTTATCGCCAAC----AAGGAGGACTCAATCAACGGTATCTATGGAACTCT 104427 |||| ||| ||| | || ||| || || ||||| || | ||||| | || |||| | Sbjct 39570 AGTT-CTTGCTTCTTGCTAACTGTAAAAGAAGACTCCATTGATGGTATTTTTGAAACTTT 39628 Query 104428 TACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACA---TCCATGA 104484 | | ||| ||||||||| ||||| ||||| || | | || ||| || Sbjct 39629 AAAATAAATTGCTATTATCTCAAAGGCTGCTGGTGGTATCGGAGT-CTCAGTGTCC--GA 39685 Query 104485 TGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCC 104544 ||| ||||| | | || || | || ||||| || | ||| |||| | ||||| Sbjct 39686 TGTAAGAGCTGCTGACTCCTACATCAGAGGTACAAACGGATATTCAAATGGATTGATTCC 39745 Query 104545 AATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGTC---GAAA 104601 |||| | || || || | ||| || | || || || ||| ||| | |||| Sbjct 39746 AATGTTAAAGGTTTTCAATGACACCGCAAGATACGTGGATTAAGGTGGTGGAAAAAGAAA 39805 Query 104602 GGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTT 104661 |||| || |||| |||||| |||| ||||||||||| |||||| || |||||| | | Sbjct 39806 GGGAGCTTTCGCTGTCTATGTTGAACCATGGCACGCTGATATCTACGACTTCCTTTAACT 39865 Query 104662 GCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGAT 104721 | || || ||| | || ||| | | || || |||| |||||| |||| Sbjct 39866 CAGAAAGAATCACGGTAAGGAAGAGAATAGAGCTAGAGACCTTTTCTACGCTCTTTGGAC 39925 Query 104722 TCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGA 104781 ||||||||| ||||||| |||||||| | | || ||||| ||||| | |||||| | Sbjct 39926 TCCAGATCTTTTCATGAGAAGAGTTGAAGCAAATGAAGATTGGACTCTCATGTGTCCAAA 39985 Query 104782 -CAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGT 104840 || || || || || | | | ||||||||||||||| ||||||| ||| Sbjct 39986 TGAATGC-CCAGGACTTACTACTACATGGGGTGAGGAGTTTGAGAAACTTTACATCGAGT 40044 Query 104841 ACGA-------GGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAA 104893 | || || || |||||| ||||| | | || || || | | || || | Sbjct 40045 ATGAAACCACTGGTAG-AGGTCGCAAGACTGTTAAG--GCTAGATG--GCTCTGGGGTTA 40099 Query 104894 GCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGT 104953 || | ||||||||| |||||||||||| || || |||||||||||||| || || Sbjct 40100 --AATCATAGAGTCTCAAAACGAGACTGGTACTCCTTATATGCTTTACAAAGATGCTTGC 40157 Query 104954 AACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAA 105013 || ||| || | | ||| | || || |||||||| || || || || || Sbjct 40158 AATAGAAAATCCAACTAGTAAAATCTTGGCACAATTAAGAGTTCTAACCTTTGCACTGAG 40217 Query 105014 ATCTTGGAATTTA-CAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCT 105072 ||| | ||||||| ||| | |||||| |||||| ||||| || || || || ||| | Sbjct 40218 ATCGTCGAATTTACCAGTC-CAGATGAAGTGGCTGTCTGTAATCTAGCTTCTATTGCTTT 40276 Query 105073 CCCCAAGTATGTGGATCCAGAGA-CAAAGACATTTGATTATGAAAAACTCCACGAAGTTA 105131 | | ||| || | | |||| || ||||||||| || | || | || | Sbjct 40277 AAATAGATTCGTGTTAAAGGAAACCTAAGA-ATATGATTATGAGAAGTTACATTACGTGA 40335 Query 105132 CGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGA 105191 | || | | || || || ||||| | | |||| |||| |||| || || ||| Sbjct 40336 CCAAGAGAATTACTAAGAATCTAAATAAAATTATAGATAACAATTACTATCCTGTTCCTG 40395 Query 105192 CTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGT 105237 ||| | || || ||| | |||||| | |||||||| | ||||| Sbjct 40396 AAGCTAGAAATTCAAATCTTAGACACAGACCAATTGGAATTGGTGT 40441 >seq17288 Length=143976 Score = 122 bits (134), Expect = 1e-22 Identities = 185/256 (72%), Gaps = 7/256 (3%) Strand=Plus/Plus Query 94702 GAGAAGAAGCAGCTCTTTGAAGCCATC-CAAACAGTTCCGTGTATTCAA-AAGAAAGCGG 94759 |||||| || ||||| |||||||| | |||| ||| || | | ||||| || | Sbjct 116728 GAGAAGGAGTTCCTCTTCAAAGCCATCACTAACA--TCCCAGTTGTAACTAAGAAGGCTG 116785 Query 94760 ATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCAT 94819 | ||||| || |||||| ||| | | || ||| | ||| |||||| |||| | || | Sbjct 116786 AATGGGCCATTAAGTGGATTGGTG-AGAG-CGC-TAGCTTCGCTGAGAGACTAATTGCTT 116842 Query 94820 TTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGA 94879 | || | | ||||| ||||||||||| || ||||||||| | || | ||||| |||| Sbjct 116843 TCGCTGCTATCGAGGGCATCTTCTTCTCAGGATCCTTCTGCTCAATCTTCTGGCTTAAGA 116902 Query 94880 AGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGAC 94939 |||| || ||||||||||||||| |||||| || ||||| || || | ||||| || Sbjct 116903 AGCGTGGCCTCATGCCAGGTCTCACCTTCTCAAATGAGCTCATTTCAAGAGACGAAGGTA 116962 Query 94940 TCCACCAAGAGTTTGC 94955 | ||| || ||||| Sbjct 116963 TGCACACTGACTTTGC 116978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583073281652800