Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq17288 118 1e-21 >seq17288 Length=143976 Score = 118 bits (130), Expect = 1e-21 Identities = 345/525 (66%), Gaps = 10/525 (2%) Strand=Plus/Plus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| ||| | ||| | | | |||||| || ||||| || ||||||||| ||| Sbjct 116441 TGTACAAGGACCAGATGGCTGCTTTCTGGACCTCTGAGGAAATCGACCTCGCCACCGACG 116500 Query 59653 TGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCT 59712 | ||||||||||| | ||||| || ||||| || || |||||| ||||| |||| Sbjct 116501 TTAAGGATTGGGAGAGACTCAACGACAACGAGAGACACTTTATCAAGCACGTCCTTGCCT 116560 Query 59713 TCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATG 59772 | ||||| || || ||||| || | || || | | | || || | | || Sbjct 116561 TTTTCGCTGCCTCAGACGGAATCGTCAACGAGAACCTCGCCCAGAGATTCTGTACTGAAA 116620 Query 59773 TCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCACT 59832 |||| || | || || || | ||||| | | || | | | ||| || |||| Sbjct 116621 TCCAAGTTCCAGAAGCACGCTGTTTCTATGGCTTCCAAATGATGATGGAGAACATTCACT 116680 Query 59833 CCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTC 59892 | ||||| ||||| | | ||||| | | ||| || || | ||||||| | Sbjct 116681 CAGAGACTTACTCAGTACTCATCGACACCCTCATCAGTGACCCACACGAGAAGGAGTTCC 116740 Query 59893 TGTTCCGTGCCAT-AGAGACGTCCCCCGCAGTTA-AACAAAAA--GCAGAATGGGCCATG 59948 | ||| ||||| | || |||| |||| ||| || | || ||||||||||| Sbjct 116741 TCTTCAAAGCCATCACTAACATCCC----AGTTGTAACTAAGAAGGCTGAATGGGCCATT 116796 Query 59949 CAGTGGATGAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCG-TGGA 60007 ||||||| || | || || || | | || || ||||| || ||| | || Sbjct 116797 AAGTGGATTGGTGAGAGCGCTAGCTTCGCTGAGAGACTAATTGCTTTCGC-TGCTATCGA 116855 Query 60008 AGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCAT 60067 || ||||||||||| || || ||||| | || |||||||| || |||||||||||||| Sbjct 116856 GGGCATCTTCTTCTCAGGATCCTTCTGCTCAATCTTCTGGCTTAAGAAGCGTGGCCTCAT 116915 Query 60068 GCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGG 60112 ||| || || | ||||| || ||||| ||||| | ||||| || Sbjct 116916 GCCAGGTCTCACCTTCTCAAATGAGCTCATTTCAAGAGACGAAGG 116960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548348449276800