Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq17288 138 1e-27 >seq17288 Length=143976 Score = 138 bits (152), Expect = 1e-27 Identities = 363/552 (66%), Gaps = 4/552 (1%) Strand=Plus/Minus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 ||||| ||||| || | ||||| || || | || || ||||| || ||||||||| Sbjct 116960 CCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGACCTGGCATGAGGCCACGCTTC 116901 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||| ||||| | |||||||| || |||||||||||| |||| | || || Sbjct 116900 TTAAGCCAGAAGATTGAGCAGAAGGATCCTGAGAAGAAGATGCCCTCGATAGCAGCGAAA 116841 Query 74889 GCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCAAGTCTGAGCCCATTCAGCT 74948 || | || | | ||||| || | ||||| | ||||||||||| Sbjct 116840 GCAATTAGTCTCTCAGCGAAGCTAGCGCTCTCACCAATCCACTTAATGGCCCATTCAGCC 116781 Query 74949 TT--TCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGG 75006 || | ||| || | |||| || ||| |||| ||||||| ||||||| | | Sbjct 116780 TTCTTAGTT--ACAACTGGGATGTTAGTGATGGCTTTGAAGAGGAACTCCTTCTCGTGTG 116723 Query 75007 GATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGA 75066 | || ||| ||| |||| || | | |||||| ||||| || ||||| ||| | | Sbjct 116722 GGTCACTGATGAGGGTGTCGATGAGTACTGAGTAAGTCTCTGAGTGAATGTTCTCCATCA 116663 Query 75067 ACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCA 75126 | ||| | | |||||| | || || |||| || || | || | | || || Sbjct 116662 TCATTTGGAAGCCATAGAAACAGCGTGCTTCTGGAACTTGGATTTCAGTACAGAATCTCT 116603 Query 75127 TGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGA 75186 | ||| ||||| ||||||| ||||| ||||| |||||||| || || || |||| Sbjct 116602 GGGCGAGGTTCTCGTTGACGATTCCGTCTGAGGCAGCGAAAAAGGCAAGGACGTGCTTGA 116543 Query 75187 TAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAA 75246 ||||||| | ||| | ||| ||||| | ||||||||||| | ||| || | || | Sbjct 116542 TAAAGTGTCTCTCGTTGTCGTTGAGTCTCTCCCAATCCTTAACGTCGGTGGCGAGGTCGA 116483 Query 75247 TCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACAAAGACCACAAGTCAGGGT 75306 | ||||| ||||||||| | ||| | ||||||| ||| | ||| || Sbjct 116482 TTTCCTCAGAGGTCCAGAAAGCAGCCATCTGGTCCTTGTACATCTTCCAGATGTCGTTGT 116423 Query 75307 AATTGATTGGAA 75318 | |||||||||| Sbjct 116422 ACTTGATTGGAA 116411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547040070056000