Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq18779 89.7 3e-13 seq17194 86.0 4e-12 seq2143 86.0 4e-12 >seq18779 Length=42783 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| | | ||||| |||||||| ||||||||| ||||| || || || Sbjct 13366 CCACCTCTAAGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGAC 13307 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| ||||||||||||| ||||| || || || | | ||||| || || || Sbjct 13306 AAGGTTCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGG 13247 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||| || | || ||| | ||| |||||| ||| || Sbjct 13246 ATACCTTCCTTGTCCTAGATC-TTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAAC 13188 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || ||||| | || || || || || ||||| Sbjct 13187 ATCGAGGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 13140 >seq17194 Length=120762 Score = 86.0 bits (94), Expect = 4e-12 Identities = 108/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TG 34537 || |||||||| | | ||||| |||||||| ||||||||| ||||| || || | Sbjct 43825 CCACCTCTAAGTCTGAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTC 43884 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 ||||| | || |||||||||||||||||||||| || || | | ||||| || || | Sbjct 43885 AAAGTTCT-GC-CGTCTTCAAGTTGTTTACCGGCGAAGATGAGTCTTTGTTGATCGGGTG 43942 Query 34598 GCACTCCCTCCTTGTCTGTGATCTT 34622 | | || |||||||| |||||| Sbjct 43943 GAATACCTTCCTTGTCCTGGATCTT 43967 >seq2143 Length=26640 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| | | ||||| |||||||| ||||||||| ||||| || || || Sbjct 5785 CCACCTCTAAGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGAC 5844 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| ||||||||||||| ||||| || || || | | ||||| || || || Sbjct 5845 AAGGTTCTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGG 5904 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||| || | || ||| | ||| |||||| ||| || Sbjct 5905 ATACCTTCCTTGTCCTAGATC-TTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAAC 5963 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || ||||| | || || || || || ||||| Sbjct 5964 ATCGA-GGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 6010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314630944072760