Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq20086 116 3e-21 seq10467 116 3e-21 seq6376 116 3e-21 seq5238 116 3e-21 seq1293 116 3e-21 seq18779 105 6e-18 seq2143 105 6e-18 seq17194 104 2e-17 >seq20086 Length=32257 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| |||| || || || ||| ||||||| ||| ||||||||||||| || || || || Sbjct 21972 ATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCTTCT 22031 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || ||||||||||||||||| || || || |||||| Sbjct 22032 GATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAA 22091 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || | ||||||||| | ||| | || ||||||||| Sbjct 22092 CAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTACAAC 22151 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || ||||| || || || | || ||||| Sbjct 22152 ATCCAAAAAGAATCAACTCTCCACTTGGT 22180 >seq10467 Length=17661 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| |||| || || || ||| ||||||| ||| ||||||||||||| || || || || Sbjct 3611 ATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCTTCT 3670 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || ||||||||||||||||| || || || |||||| Sbjct 3671 GATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAA 3730 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || | ||||||||| | ||| | || ||||||||| Sbjct 3731 CAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTACAAC 3790 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 || ||||| || || || | || ||||| || Sbjct 3791 ATCCAAAAAGAATCAACTCTCCACTTGGTCTT 3822 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| |||| || || || ||| ||||||| ||| ||||||||||||| || || || || Sbjct 14043 ATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCTTCT 13984 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || ||||||||||||||||| || || || |||||| Sbjct 13983 GATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAA 13924 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || | ||||||||| | ||| | || ||||||||| Sbjct 13923 CAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTACAAC 13864 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 || ||||| || || || | || ||||| || Sbjct 13863 ATCCAAAAAGAATCAACTCTCCACTTGGTCTT 13832 >seq6376 Length=13110 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| |||| || || || ||| ||||||| ||| ||||||||||||| || || || || Sbjct 12009 ATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCTTCT 12068 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || ||||||||||||||||| || || || |||||| Sbjct 12069 GATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAA 12128 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || | ||||||||| | ||| | || ||||||||| Sbjct 12129 CAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTACAAC 12188 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 || ||||| || || || | || ||||| || Sbjct 12189 ATCCAAAAAGAATCAACTCTCCACTTGGTCTT 12220 >seq5238 Length=45295 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| |||| || || || ||| ||||||| ||| ||||||||||||| || || || || Sbjct 21820 ATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCTTCT 21879 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || ||||||||||||||||| || || || |||||| Sbjct 21880 GATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAA 21939 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || | ||||||||| | ||| | || ||||||||| Sbjct 21940 CAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTACAAC 21999 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 || ||||| || || || | || ||||| || Sbjct 22000 ATCCAAAAAGAATCAACTCTCCACTTGGTCTT 22031 >seq1293 Length=7053 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| |||| || || || ||| ||||||| ||| ||||||||||||| || || || || Sbjct 6298 ATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCTTCT 6357 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || ||||||||||||||||| || || || |||||| Sbjct 6358 GATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAA 6417 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || | ||||||||| | ||| | || ||||||||| Sbjct 6418 CAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTACAAC 6477 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 || ||||| || || || | || ||||| || Sbjct 6478 ATCCAAAAAGAATCAACTCTCCACTTGGTCTT 6509 >seq18779 Length=42783 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || || || |||||| | || ||| | || || || || || Sbjct 12455 CATGCAAATCTTCGTTAAGACCCTCACAGGCAAGACCATCACTTTGGACGTTGAGCCCTC 12514 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | ||||| || || |||||||| ||||| || ||||||||||| Sbjct 12515 TGACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGATCA 12574 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | ||| ||||| ||| | |||||| | ||| || || ||||| Sbjct 12575 ACAAAGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCCTTAGTGACTACAA 12634 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 ||| || ||||| || ||| | || |||||| Sbjct 12635 CATCCAGAAGGAATCAACCCTTCACTTGGTT 12665 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || ||||| ||| | || || | || || || || || Sbjct 12912 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGAGCCTTCA 12971 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| ||||| ||| || |||||||| ||||| || |||||||||||| Sbjct 12972 GATACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAA 13031 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | || || || ||| | ||||| | ||| || || |||||| Sbjct 13032 CAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAAC 13091 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| ||| | || ||||| | | ||| | ||||| || Sbjct 13092 ATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGGTAT 13141 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || ||||| ||| | || || || || || || || || Sbjct 13140 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCCTCGATGTTGAGCCATCA 13199 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || | ||||| ||||| || |||||||||||| Sbjct 13200 GACACCATTGAAAACGTGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATCAA 13259 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | ||| || || ||| | |||||| | ||| | ||||| |||||| Sbjct 13260 CAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACAAC 13319 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || ||||||||||| || | || ||||| Sbjct 13320 ATCCAAAAGGAGTCAACTCTCCACTTGGT 13348 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || || ||| | || |||||||| || || || || Sbjct 12684 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTCTTGATGTTGAGCCATCA 12743 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || ||||| || ||||| || || ||||||||| Sbjct 12744 GACACTATTGAAAACGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCCGATCAA 12803 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | || || || ||| | ||||| | ||| || || |||||| Sbjct 12804 CAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAAC 12863 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| ||| | || ||||| | | ||| | ||||| || Sbjct 12864 ATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGGTAT 12913 >seq2143 Length=26640 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || || || |||||| | || ||| | || || || || || Sbjct 6726 CATGCAAATCTTCGTTAAGACCCTCACAGGCAAGACCATCACTTTGGACGTTGAGCCCTC 6667 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | ||||| || || |||||||| ||||| || ||||||||||| Sbjct 6666 TGACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGATCA 6607 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | ||| ||||| ||| | |||||| | ||| || || ||||| Sbjct 6606 ACAAAGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCCTTAGTGACTACAA 6547 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 ||| || ||||| || ||| | || |||||| Sbjct 6546 CATCCAGAAGGAATCAACCCTTCACTTGGTT 6516 Score = 98.7 bits (108), Expect = 9e-16 Identities = 148/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || ||||| ||| | || || || || || || || || Sbjct 6010 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCAC-CTCGATGTTGAGCCATCA 5952 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || | ||||| ||||| || |||||||||||| Sbjct 5951 GACACCATTGAAAACGTGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATCAA 5892 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | ||| || || ||| | |||||| | ||| | ||||| |||||| Sbjct 5891 CAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACAAC 5832 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || ||||||||||| || | || ||||| Sbjct 5831 ATCCAAAAGGAGTCAACTCTCCACTTGGT 5803 >seq17194 Length=120762 Score = 104 bits (114), Expect = 2e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 27054 ATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGT 27113 ||||| | ||||| || || ||||||||||| || || ||||||||||||||| | Sbjct 44722 ATTGAAAATGTCAAGGCTAAGATCCAAGACAAAGAGGGAATCCCACCCGATCAACAGAGA 44663 Query 27114 TTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAA 27173 | || | ||| || ||||| ||||||||| | ||| | ||||| |||||||| || Sbjct 44662 CTCATTTTCGCTGGAAAACAGTTGGAAGACGGCAGAACCCTCTCCGACTACAACATCCAG 44603 Query 27174 AAGGAGTCGACCTTACATTTGGTTTTG 27200 |||||||| ||| | || ||||| ||| Sbjct 44602 AAGGAGTCAACCCTTCACTTGGTCTTG 44576 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27053 GATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCG 27112 ||| |||| |||||| || || || ||||| ||||| || |||||||||||||| | Sbjct 43986 GATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCACCCGATCAACAAAG 43927 Query 27113 TTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCA 27172 | || | |||||| |||||| | |||||| | || | ||| |||||||| || Sbjct 43926 ACTCATCTTCGCCGGTAAACAACTTGAAGACGGCAGAACTTTGAGCGACTACAACATCCA 43867 Query 27173 AAAGGAGTCGACCTTACATTTGGT 27196 ||||||||| || | || ||||| Sbjct 43866 AAAGGAGTCTACTCTCCACTTGGT 43843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434778573734400