Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_028898.1 Length=35764 Score E Sequences producing significant alignments: (Bits) Value seq25347 154 3e-33 seq16881 154 3e-33 seq2559 154 3e-33 >seq25347 Length=58133 Score = 154 bits (170), Expect = 3e-33 Identities = 316/465 (68%), Gaps = 10/465 (2%) Strand=Plus/Plus Query 24572 TAACCACTCATCTAAATCCGCTTGTAATGTCGTTAAATC--CGTATAAATTTTCTTCCTA 24629 |||||| ||||||| ||| | ||||||| || | | | || |||||| || || || Sbjct 52903 TAACCATTCATCTAGATCAGTTTGTAAT-TCCTCTATTGAACG-ATAAATCTTTTTTCTG 52960 Query 24630 AATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTCGCAGATGCCGTTA 24689 ||||| | | ||||| || | | || ||||||| | || || || || || || Sbjct 52961 AATGCGATATCATAAAACTCCTCTTTAATAGTTTTATTTAGCCTCTCACAAATACCATTG 53020 Query 24690 GTCTGCGGATGTTTTACCTTGGTTTTACTGTGTTCAATATCATTTATTGCTAAATAAAGC 24749 || || || || ||||||||||| || ||||| | | || || | ||| ||| Sbjct 53021 GTTTGTGGGGAGCGAACTTTGGTTTTACTATGATCAATGTTTTCTACAGCAAGATATAGC 53080 Query 24750 TCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTCAGTTAATATGCGT 24809 | |||| | || |||| || ||||| |||||| | |||| |||||||| || || Sbjct 53081 TGATAAGCATGGGTTTCAACTAGTCCACAGTATTCAGTACCTCTATCAGTTAAAATTCGC 53140 Query 24810 AACATCGGTAAACCTTGGCTTTCA---AAGTATGGTAACACTTTATCATTCAGCATATCC 24866 | | |||||| | || |||| || |||| | ||||||||||| || || | Sbjct 53141 ATTAATGGTAAATCCTG---TTCATGGAACCATGGAATTACTTTATCATTAAGAATGTGG 53197 Query 24867 GCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCACTTTACTGTAAGTA 24926 || || | || || || || |||||| | | ||||| || ||| | ||| ||| Sbjct 53198 GCTGCTGTTATGGCAGTTTTTTCTGTATATAAATGAGCAAATGCGACTCTGGAGTAGGTA 53257 Query 24927 TCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCCCACATAGAAAGTA 24986 |||||||| || |||||||||| ||||| | || || | || ||| || ||||| Sbjct 53258 TCAATAAATGTCTGTTGATAAACTCGACCAATACCATTTACCAGACCAACAAAGTAAGTA 53317 Query 24987 TCTTGTGAGCCAAGATAGCCAGGGTGTGCCGTTTCAATTTCACCA 25031 || |||| || ||||| || || ||| | ||||||||||| ||| Sbjct 53318 TCCTGTGCTCCGAGATAACCTGGATGTTCTGTTTCAATTTCTCCA 53362 >seq16881 Length=21188 Score = 154 bits (170), Expect = 3e-33 Identities = 316/465 (68%), Gaps = 10/465 (2%) Strand=Plus/Plus Query 24572 TAACCACTCATCTAAATCCGCTTGTAATGTCGTTAAATC--CGTATAAATTTTCTTCCTA 24629 |||||| ||||||| ||| | ||||||| || | | | || |||||| || || || Sbjct 8433 TAACCATTCATCTAGATCAGTTTGTAAT-TCCTCTATTGAACG-ATAAATCTTTTTTCTG 8490 Query 24630 AATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTCGCAGATGCCGTTA 24689 ||||| | | ||||| || | | || ||||||| | || || || || || || Sbjct 8491 AATGCGATATCATAAAACTCCTCTTTAATAGTTTTATTTAGCCTCTCACAAATACCATTG 8550 Query 24690 GTCTGCGGATGTTTTACCTTGGTTTTACTGTGTTCAATATCATTTATTGCTAAATAAAGC 24749 || || || || ||||||||||| || ||||| | | || || | ||| ||| Sbjct 8551 GTTTGTGGGGAGCGAACTTTGGTTTTACTATGATCAATGTTTTCTACAGCAAGATATAGC 8610 Query 24750 TCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTCAGTTAATATGCGT 24809 | |||| | || |||| || ||||| |||||| | |||| |||||||| || || Sbjct 8611 TGATAAGCATGGGTTTCAACTAGTCCACAGTATTCAGTACCTCTATCAGTTAAAATTCGC 8670 Query 24810 AACATCGGTAAACCTTGGCTTTCA---AAGTATGGTAACACTTTATCATTCAGCATATCC 24866 | | |||||| | || |||| || |||| | ||||||||||| || || | Sbjct 8671 ATTAATGGTAAATCCTG---TTCATGGAACCATGGAATTACTTTATCATTAAGAATGTGG 8727 Query 24867 GCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCACTTTACTGTAAGTA 24926 || || | || || || || |||||| | | ||||| || ||| | ||| ||| Sbjct 8728 GCTGCTGTTATGGCAGTTTTTTCTGTATATAAATGAGCAAATGCGACTCTGGAGTAGGTA 8787 Query 24927 TCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCCCACATAGAAAGTA 24986 |||||||| || |||||||||| ||||| | || || | || ||| || ||||| Sbjct 8788 TCAATAAATGTCTGTTGATAAACTCGACCAATACCATTTACCAGACCAACAAAGTAAGTA 8847 Query 24987 TCTTGTGAGCCAAGATAGCCAGGGTGTGCCGTTTCAATTTCACCA 25031 || |||| || ||||| || || ||| | ||||||||||| ||| Sbjct 8848 TCCTGTGCTCCGAGATAACCTGGATGTTCTGTTTCAATTTCTCCA 8892 >seq2559 Length=14151 Score = 154 bits (170), Expect = 3e-33 Identities = 316/465 (68%), Gaps = 10/465 (2%) Strand=Plus/Plus Query 24572 TAACCACTCATCTAAATCCGCTTGTAATGTCGTTAAATC--CGTATAAATTTTCTTCCTA 24629 |||||| ||||||| ||| | ||||||| || | | | || |||||| || || || Sbjct 12985 TAACCATTCATCTAGATCAGTTTGTAAT-TCCTCTATTGAACG-ATAAATCTTTTTTCTG 13042 Query 24630 AATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTCGCAGATGCCGTTA 24689 ||||| | | ||||| || | | || ||||||| | || || || || || || Sbjct 13043 AATGCGATATCATAAAACTCCTCTTTAATAGTTTTATTTAGCCTCTCACAAATACCATTG 13102 Query 24690 GTCTGCGGATGTTTTACCTTGGTTTTACTGTGTTCAATATCATTTATTGCTAAATAAAGC 24749 || || || || ||||||||||| || ||||| | | || || | ||| ||| Sbjct 13103 GTTTGTGGGGAGCGAACTTTGGTTTTACTATGATCAATGTTTTCTACAGCAAGATATAGC 13162 Query 24750 TCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTCAGTTAATATGCGT 24809 | |||| | || |||| || ||||| |||||| | |||| |||||||| || || Sbjct 13163 TGATAAGCATGGGTTTCAACTAGTCCACAGTATTCAGTACCTCTATCAGTTAAAATTCGC 13222 Query 24810 AACATCGGTAAACCTTGGCTTTCA---AAGTATGGTAACACTTTATCATTCAGCATATCC 24866 | | |||||| | || |||| || |||| | ||||||||||| || || | Sbjct 13223 ATTAATGGTAAATCCTG---TTCATGGAACCATGGAATTACTTTATCATTAAGAATGTGG 13279 Query 24867 GCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCACTTTACTGTAAGTA 24926 || || | || || || || |||||| | | ||||| || ||| | ||| ||| Sbjct 13280 GCTGCTGTTATGGCAGTTTTTTCTGTATATAAATGAGCAAATGCGACTCTGGAGTAGGTA 13339 Query 24927 TCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCCCACATAGAAAGTA 24986 |||||||| || |||||||||| ||||| | || || | || ||| || ||||| Sbjct 13340 TCAATAAATGTCTGTTGATAAACTCGACCAATACCATTTACCAGACCAACAAAGTAAGTA 13399 Query 24987 TCTTGTGAGCCAAGATAGCCAGGGTGTGCCGTTTCAATTTCACCA 25031 || |||| || ||||| || || ||| | ||||||||||| ||| Sbjct 13400 TCCTGTGCTCCGAGATAACCTGGATGTTCTGTTTCAATTTCTCCA 13444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114288282836640