Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_028956.1 Length=52139 Score E Sequences producing significant alignments: (Bits) Value seq25347 161 3e-35 seq16881 161 3e-35 seq2559 161 3e-35 >seq25347 Length=58133 Score = 161 bits (178), Expect = 3e-35 Identities = 320/466 (69%), Gaps = 12/466 (3%) Strand=Plus/Plus Query 40839 TAACCACTCATCTAAATCCGCTTGTAATGTCGTTAAATC--CGTATAAATTTTCTTCCTA 40896 |||||| ||||||| ||| | ||||||| || | | | || |||||| || || || Sbjct 52903 TAACCATTCATCTAGATCAGTTTGTAAT-TCCTCTATTGAACG-ATAAATCTTTTTTCTG 52960 Query 40897 AATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTCGCAGATACCATTC 40956 ||||| | | ||||| || | | || ||||||| | || || || |||||||| Sbjct 52961 AATGCGATATCATAAAACTCCTCTTTAATAGTTTTATTTAGCCTCTCACAAATACCATTG 53020 Query 40957 GTCTG-GGGATGCTTCACTTTCGTTTTCGTATGCTCTATGTCATTTATCGCTAAATAAAG 41015 || || ||| || ||||| ||||| |||| || |||| | || || | ||| || Sbjct 53021 GTTTGTGGGGAGCGA-ACTTTGGTTTTACTATGATCAATGTTTTCTACAGCAAGATATAG 53079 Query 41016 CTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTCAGTTAATATGCG 41075 || |||| | || |||| || ||||| |||||| | |||| |||||||| || || Sbjct 53080 CTGATAAGCATGGGTTTCAACTAGTCCACAGTATTCAGTACCTCTATCAGTTAAAATTCG 53139 Query 41076 TAACATCGGTAAACCTTGGCTTTCA---AAGTATGGTAACACTTTATCATTCAGCATATC 41132 | | |||||| | || |||| || |||| | ||||||||||| || || | Sbjct 53140 CATTAATGGTAAATCCTG---TTCATGGAACCATGGAATTACTTTATCATTAAGAATGTG 53196 Query 41133 CGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCACTTTACTGTAAGT 41192 || || | || || || || |||||| | | ||||| || ||| | ||| || Sbjct 53197 GGCTGCTGTTATGGCAGTTTTTTCTGTATATAAATGAGCAAATGCGACTCTGGAGTAGGT 53256 Query 41193 ATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCCCACATAGAAAGT 41252 ||||||||| || |||||||||| ||||| | || || | || ||| || |||| Sbjct 53257 ATCAATAAATGTCTGTTGATAAACTCGACCAATACCATTTACCAGACCAACAAAGTAAGT 53316 Query 41253 ATCTTGTGAGCCAAGATAGCCAGGGTGTACCGTTTCAATTTCACCA 41298 ||| |||| || ||||| || || ||| | ||||||||||| ||| Sbjct 53317 ATCCTGTGCTCCGAGATAACCTGGATGTTCTGTTTCAATTTCTCCA 53362 >seq16881 Length=21188 Score = 161 bits (178), Expect = 3e-35 Identities = 320/466 (69%), Gaps = 12/466 (3%) Strand=Plus/Plus Query 40839 TAACCACTCATCTAAATCCGCTTGTAATGTCGTTAAATC--CGTATAAATTTTCTTCCTA 40896 |||||| ||||||| ||| | ||||||| || | | | || |||||| || || || Sbjct 8433 TAACCATTCATCTAGATCAGTTTGTAAT-TCCTCTATTGAACG-ATAAATCTTTTTTCTG 8490 Query 40897 AATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTCGCAGATACCATTC 40956 ||||| | | ||||| || | | || ||||||| | || || || |||||||| Sbjct 8491 AATGCGATATCATAAAACTCCTCTTTAATAGTTTTATTTAGCCTCTCACAAATACCATTG 8550 Query 40957 GTCTG-GGGATGCTTCACTTTCGTTTTCGTATGCTCTATGTCATTTATCGCTAAATAAAG 41015 || || ||| || ||||| ||||| |||| || |||| | || || | ||| || Sbjct 8551 GTTTGTGGGGAGCGA-ACTTTGGTTTTACTATGATCAATGTTTTCTACAGCAAGATATAG 8609 Query 41016 CTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTCAGTTAATATGCG 41075 || |||| | || |||| || ||||| |||||| | |||| |||||||| || || Sbjct 8610 CTGATAAGCATGGGTTTCAACTAGTCCACAGTATTCAGTACCTCTATCAGTTAAAATTCG 8669 Query 41076 TAACATCGGTAAACCTTGGCTTTCA---AAGTATGGTAACACTTTATCATTCAGCATATC 41132 | | |||||| | || |||| || |||| | ||||||||||| || || | Sbjct 8670 CATTAATGGTAAATCCTG---TTCATGGAACCATGGAATTACTTTATCATTAAGAATGTG 8726 Query 41133 CGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCACTTTACTGTAAGT 41192 || || | || || || || |||||| | | ||||| || ||| | ||| || Sbjct 8727 GGCTGCTGTTATGGCAGTTTTTTCTGTATATAAATGAGCAAATGCGACTCTGGAGTAGGT 8786 Query 41193 ATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCCCACATAGAAAGT 41252 ||||||||| || |||||||||| ||||| | || || | || ||| || |||| Sbjct 8787 ATCAATAAATGTCTGTTGATAAACTCGACCAATACCATTTACCAGACCAACAAAGTAAGT 8846 Query 41253 ATCTTGTGAGCCAAGATAGCCAGGGTGTACCGTTTCAATTTCACCA 41298 ||| |||| || ||||| || || ||| | ||||||||||| ||| Sbjct 8847 ATCCTGTGCTCCGAGATAACCTGGATGTTCTGTTTCAATTTCTCCA 8892 >seq2559 Length=14151 Score = 161 bits (178), Expect = 3e-35 Identities = 320/466 (69%), Gaps = 12/466 (3%) Strand=Plus/Plus Query 40839 TAACCACTCATCTAAATCCGCTTGTAATGTCGTTAAATC--CGTATAAATTTTCTTCCTA 40896 |||||| ||||||| ||| | ||||||| || | | | || |||||| || || || Sbjct 12985 TAACCATTCATCTAGATCAGTTTGTAAT-TCCTCTATTGAACG-ATAAATCTTTTTTCTG 13042 Query 40897 AATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTCGCAGATACCATTC 40956 ||||| | | ||||| || | | || ||||||| | || || || |||||||| Sbjct 13043 AATGCGATATCATAAAACTCCTCTTTAATAGTTTTATTTAGCCTCTCACAAATACCATTG 13102 Query 40957 GTCTG-GGGATGCTTCACTTTCGTTTTCGTATGCTCTATGTCATTTATCGCTAAATAAAG 41015 || || ||| || ||||| ||||| |||| || |||| | || || | ||| || Sbjct 13103 GTTTGTGGGGAGCGA-ACTTTGGTTTTACTATGATCAATGTTTTCTACAGCAAGATATAG 13161 Query 41016 CTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTCAGTTAATATGCG 41075 || |||| | || |||| || ||||| |||||| | |||| |||||||| || || Sbjct 13162 CTGATAAGCATGGGTTTCAACTAGTCCACAGTATTCAGTACCTCTATCAGTTAAAATTCG 13221 Query 41076 TAACATCGGTAAACCTTGGCTTTCA---AAGTATGGTAACACTTTATCATTCAGCATATC 41132 | | |||||| | || |||| || |||| | ||||||||||| || || | Sbjct 13222 CATTAATGGTAAATCCTG---TTCATGGAACCATGGAATTACTTTATCATTAAGAATGTG 13278 Query 41133 CGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCACTTTACTGTAAGT 41192 || || | || || || || |||||| | | ||||| || ||| | ||| || Sbjct 13279 GGCTGCTGTTATGGCAGTTTTTTCTGTATATAAATGAGCAAATGCGACTCTGGAGTAGGT 13338 Query 41193 ATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCCCACATAGAAAGT 41252 ||||||||| || |||||||||| ||||| | || || | || ||| || |||| Sbjct 13339 ATCAATAAATGTCTGTTGATAAACTCGACCAATACCATTTACCAGACCAACAAAGTAAGT 13398 Query 41253 ATCTTGTGAGCCAAGATAGCCAGGGTGTACCGTTTCAATTTCACCA 41298 ||| |||| || ||||| || || ||| | ||||||||||| ||| Sbjct 13399 ATCCTGTGCTCCGAGATAACCTGGATGTTCTGTTTCAATTTCTCCA 13444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166672278566640