Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq19631 91.5 1e-13 seq4898 91.5 1e-13 >seq19631 Length=63550 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/231 (69%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 118468 AGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCA 118527 ||||| |||| ||||| |||| ||||||||||| || | | ||| ||||| || || Sbjct 34588 AGTGGTTCAACATGATTTTTATATACATGAGCATCACCTAATACATGAATGAACTCTCCT 34647 Query 118528 GGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTA 118587 | | || || || |||| |||| | || ||||| || || || | || Sbjct 34648 CTCTTCAATCCGCACACTTGTGCAAGCATGCAGGTTAACAATGAATAACTCGCAATGTTG 34707 Query 118588 AAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCG 118647 ||||||| ||| |||||||| || ||||| || |||| |||||| || |||| || Sbjct 34708 AAAGGAATACCAAGACCCATATCACAAGATCTTTGATACATTTGGCAGGAAAGCTTTCCA 34767 Query 118648 TTTGC---AACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATG 118695 | || ||||||||| | | || ||||| || ||||| ||| ||||| Sbjct 34768 TCAGCAGAAACATAAAATTAAGCTAAAATGTGGCAGGGAGGAAGAGCCATG 34818 >seq4898 Length=10221 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/231 (69%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 118468 AGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCA 118527 ||||| |||| ||||| |||| ||||||||||| || | | ||| ||||| || || Sbjct 3828 AGTGGTTCAACATGATTTTTATATACATGAGCATCACCTAATACATGAATGAACTCTCCT 3887 Query 118528 GGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTA 118587 | | || || || |||| |||| | || ||||| || || || | || Sbjct 3888 CTCTTCAATCCGCACACTTGTGCAAGCATGCAGGTTAACAATGAATAACTCGCAATGTTG 3947 Query 118588 AAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCG 118647 ||||||| ||| |||||||| || ||||| || |||| |||||| || |||| || Sbjct 3948 AAAGGAATACCAAGACCCATATCACAAGATCTTTGATACATTTGGCAGGAAAGCTTTCCA 4007 Query 118648 TTTGC---AACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATG 118695 | || ||||||||| | | || ||||| || ||||| ||| ||||| Sbjct 4008 TCAGCAGAAACATAAAATTAAGCTAAAATGTGGCAGGGAGGAAGAGCCATG 4058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414346877066080