Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq18779 178 3e-39 seq2143 178 3e-39 seq20086 145 2e-29 seq10467 145 2e-29 seq6376 145 2e-29 seq5238 145 2e-29 seq1293 145 2e-29 seq17194 118 2e-21 >seq18779 Length=42783 Score = 178 bits (196), Expect = 3e-39 Identities = 181/235 (77%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| || || | |||||| || || || || |||||||| || || |||||| ||| Sbjct 12673 AGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCACTAAGGGTTCTT 12614 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || ||||| || |||||||| |||||||| || | |||||| || || || | ||||||| Sbjct 12613 CCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCC 12554 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| |||||||| || || |||||||||||||||||| ||||| || | |||| Sbjct 12553 TTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACGTCCAAAGTG 12494 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT-TTTATGGTTACTTGAT 211130 || ||||| || ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 12493 ATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCATGTTTATTTTTGGTTGAT 12439 Score = 174 bits (192), Expect = 4e-38 Identities = 170/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| ||||| | ||| ||||| ||||| ||||||||||| || || | | ||| || Sbjct 13358 AAGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCT 13299 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 || ||||| || ||||| || ||||||||||| | |||||| || || || | ||||| Sbjct 13298 GCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGGATACCTTC 13239 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 |||||||| |||||| ||||||||||| |||||||| || ||||| ||||| || Sbjct 13238 CTTGTCCTAGATCTTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAACATCGAGGGT 13179 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| |||||||| || || ||||| || || | ||||| Sbjct 13178 GATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 13140 Score = 165 bits (182), Expect = 2e-35 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| ||||| | |||||| || ||||| ||||||||||| || || |||||| ||||| Sbjct 12899 TCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTAAGGGTTCTTCC 12840 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| || ||||| || || || || || | |||||| || || |||| |||||||| Sbjct 12839 ATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTT 12780 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || |||||||| || |||||||| || ||||| || ||||| || |||||||| Sbjct 12779 ATCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCTGATGGCTCAACATCAAGAGTGAT 12720 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| ||||| ||||| || || | ||||| Sbjct 12719 GGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 12684 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| ||||| | |||||| || ||||| ||||||||||| || || |||||| ||||| Sbjct 13127 TCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTAAGGGTTCTTCC 13068 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| || ||||| || || || || || | |||||| || || || | |||||||| Sbjct 13067 ATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCCTT 13008 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| ||||||||| || || || || ||||| || || || || || | ||||| Sbjct 13007 GTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCGACGTCCAAGGTGAT 12948 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| || || ||||| || || | ||||| Sbjct 12947 GGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 12912 >seq2143 Length=26640 Score = 178 bits (196), Expect = 3e-39 Identities = 181/235 (77%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| || || | |||||| || || || || |||||||| || || |||||| ||| Sbjct 6508 AGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCACTAAGGGTTCTT 6567 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || ||||| || |||||||| |||||||| || | |||||| || || || | ||||||| Sbjct 6568 CCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCC 6627 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| |||||||| || || |||||||||||||||||| ||||| || | |||| Sbjct 6628 TTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACGTCCAAAGTG 6687 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT-TTTATGGTTACTTGAT 211130 || ||||| || ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 6688 ATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCATGTTTATTTTTGGTTGAT 6742 Score = 170 bits (188), Expect = 4e-37 Identities = 170/219 (78%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| ||||| | ||| ||||| ||||| ||||||||||| || || | | ||| || Sbjct 5793 AAGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCT 5852 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 || ||||| || ||||| || ||||||||||| | |||||| || || || | ||||| Sbjct 5853 GCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGGATACCTTC 5912 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 |||||||| |||||| ||||||||||| |||||||| || ||||| ||||| || Sbjct 5913 CTTGTCCTAGATCTTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAACATCGAG-GT 5971 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| |||||||| || || ||||| || || | ||||| Sbjct 5972 GATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 6010 Score = 120 bits (132), Expect = 7e-22 Identities = 152/200 (76%), Gaps = 13/200 (7%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| ||||| | |||||| || ||||| ||||||||||| || || |||||| ||||| Sbjct 6023 TCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTAAGGGTTCTTCC 6082 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| || ||||| || || || || || | |||||| || || |||| |||||||| Sbjct 6083 ATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTT 6142 Query 211019 GTCCTGGATCTT----TTGTTTCACGTTTTCGAT-GGT-GTCAGA-GCTTTCAAC-CTCG 211070 || |||||||| ||| | |||||||| || ||| ||| || | |||||| ||| Sbjct 6143 ATCTTGGATCTTGGCCTTG--TGACGTTTTCAATAGGTAGTCTGATGGCTTCAACACTCA 6200 Query 211071 A--GAGTGAT-CGTCTTTCC 211087 | ||||||| |||||||| Sbjct 6201 AAGGAGTGATGGGTCTTTCC 6220 >seq20086 Length=32257 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| | ||| ||||| || |||||||||||||| ||||| | | ||| || || ||||| Sbjct 22181 GACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTC 22122 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || || ||| || || ||||| || | ||||| ||||| |||| ||||| ||||| || Sbjct 22121 CAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTG 22062 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 ||||| || |||||||||||||| ||||| || || || ||||| || ||||| Sbjct 22061 AATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTT 22002 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || | |||||| || || | || |||||| Sbjct 22001 ACCGGTCAAAGTCTTGACGAAGATCTACATTTT 21969 >seq10467 Length=17661 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| | ||| ||||| || |||||||||||||| ||||| | | ||| || || ||||| Sbjct 3820 GACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTC 3761 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || || ||| || || ||||| || | ||||| ||||| |||| ||||| ||||| || Sbjct 3760 CAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTG 3701 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 ||||| || |||||||||||||| ||||| || || || ||||| || ||||| Sbjct 3700 AATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTT 3641 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || | |||||| || || | || |||||| Sbjct 3640 ACCGGTCAAAGTCTTGACGAAGATCTACATTTT 3608 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| | ||| ||||| || |||||||||||||| ||||| | | ||| || || ||||| Sbjct 13834 GACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTC 13893 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || || ||| || || ||||| || | ||||| ||||| |||| ||||| ||||| || Sbjct 13894 CAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTG 13953 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 ||||| || |||||||||||||| ||||| || || || ||||| || ||||| Sbjct 13954 AATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTT 14013 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || | |||||| || || | || |||||| Sbjct 14014 ACCGGTCAAAGTCTTGACGAAGATCTACATTTT 14046 >seq6376 Length=13110 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| | ||| ||||| || |||||||||||||| ||||| | | ||| || || ||||| Sbjct 12218 GACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTC 12159 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || || ||| || || ||||| || | ||||| ||||| |||| ||||| ||||| || Sbjct 12158 CAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTG 12099 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 ||||| || |||||||||||||| ||||| || || || ||||| || ||||| Sbjct 12098 AATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTT 12039 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || | |||||| || || | || |||||| Sbjct 12038 ACCGGTCAAAGTCTTGACGAAGATCTACATTTT 12006 >seq5238 Length=45295 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| | ||| ||||| || |||||||||||||| ||||| | | ||| || || ||||| Sbjct 22029 GACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTC 21970 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || || ||| || || ||||| || | ||||| ||||| |||| ||||| ||||| || Sbjct 21969 CAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTG 21910 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 ||||| || |||||||||||||| ||||| || || || ||||| || ||||| Sbjct 21909 AATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTT 21850 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || | |||||| || || | || |||||| Sbjct 21849 ACCGGTCAAAGTCTTGACGAAGATCTACATTTT 21817 >seq1293 Length=7053 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| | ||| ||||| || |||||||||||||| ||||| | | ||| || || ||||| Sbjct 6507 GACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTC 6448 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || || ||| || || ||||| || | ||||| ||||| |||| ||||| ||||| || Sbjct 6447 CAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTG 6388 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 ||||| || |||||||||||||| ||||| || || || ||||| || ||||| Sbjct 6387 AATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTT 6328 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || | |||||| || || | || |||||| Sbjct 6327 ACCGGTCAAAGTCTTGACGAAGATCTACATTTT 6295 >seq17194 Length=120762 Score = 118 bits (130), Expect = 2e-21 Identities = 120/154 (78%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCC 210954 |||||| ||||| | ||| ||||| ||||| ||||||||||| || || | ||| || | Sbjct 43833 AAGTCTGAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTCAA-AGTTC 43891 Query 210955 TTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTT 211014 | || ||||| || || || || |||||||| || | |||||| || || |||| |||| Sbjct 43892 TGCCGTCTTCAAGTTGTTTACCGGCGAAGATGAGTCTTTGTTGATCGGGTGGAATACCTT 43951 Query 211015 CCTTGTCCTGGATCTTTTGTTTCACGTTTTCGAT 211048 |||||||||||||||| ||| || || ||||| Sbjct 43952 CCTTGTCCTGGATCTTGGCTTTGACATTCTCGAT 43985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158770015947800