Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1748 230 3e-55 seq17288 127 3e-24 >seq1748 Length=94692 Score = 230 bits (254), Expect = 3e-55 Identities = 508/756 (67%), Gaps = 18/756 (2%) Strand=Plus/Minus Query 77495 AAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAAT 77554 || ||||||||| ||||| | || ||||| ||||| ||||| ||||| ||| ||| | Sbjct 40463 AAGGGCATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGTGTCTAAGATTTGAATT 40404 Query 77555 TTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAAC 77614 | ||||||| |||| |||||| ||||| | |||||||||||||| ||||| || || Sbjct 40403 TCTAGCTTCAGGAACAGGATAGTAATTGTTATCTATAATTTTATTTAGATTCTTAGTAAT 40344 Query 77615 TACTTTAACCACGTCCTTTAGTTTAAGAAAATCA-AATCTTCCAT---CTATAACA--AA 77668 | || ||||| | || || | ||||| | |||| | || ||||| || Sbjct 40343 TCTCTTGGTCACGTAATGTAACTTCTCATAATCATATTCTTAGGTTTCCTTTAACACGAA 40284 Query 77669 CATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTG 77728 | || ||||| ||||| ||||||||||| || || || |||| | ||| | ||| Sbjct 40283 TCTATTTAAAGCAATAGAAGCTAGATTACAGACAGCCACTTCATCTGGACTGGTAAATTC 40224 Query 77729 TATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTT 77788 | ||||| || || || ||| || || || ||||| ||||||| | |||| || Sbjct 40223 GACGATCTCAGTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTGGATTT 40164 Query 77789 TTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGAT 77848 | ||||||| | || || ||||| ||| | ||||| || || || | || || || || Sbjct 40163 TCTATTGCAAGCATCTTTGTAAAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTAT 40104 Query 77849 AATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCG-CCTCTCTC-----T 77902 || | ||||| |||||| | | | || ||| || ||||| | | Sbjct 40103 GATTTAACCCCAGAGCCATCTAGCCT---TAACAGTCTTG---CGACCTCTACCAGTGGT 40050 Query 77903 TTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCA 77962 |||||| | | || || ||||| || || ||||| | | | ||| ||||| Sbjct 40049 TTCATACTCGATGTAAAGTTTCTCAAACTCCTCACCCCATGTAGTAGTAAGTCCTGGGCA 39990 Query 77963 TTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATC 78022 ||||||||| ||||| | | ||| || ||| | | | ||||| | |||| || ||||| Sbjct 39989 TTCATTTGGACACATGAGAGTCCAATCTTCATTTGCTTCAACTCTTCTCATGAAAAGATC 39930 Query 78023 AGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTT 78082 || |||| ||||| || || |||| | ||||| ||||| || || |||||| Sbjct 39929 TGGAGTCCAAAGAGCGTAGAAAAGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTT 39870 Query 78083 TTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAAC 78142 | | || | || || || ||||||| ||||||||||| | ||| | || | | | Sbjct 39869 TCTGAGTTAAAGGAAGTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGC 39810 Query 78143 TCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAA 78202 ||| || ||| ||| || | ||| | ||||| ||||||| ||| |||| | || Sbjct 39809 TCCCTTTCTTTTTCCACCACCTTAATCCACGTATCTTGCGGTGTCATTGAAAACCTTTAA 39750 Query 78203 CATTGGAATAATACCGTTAGATGTTCCATTTGTTCC 78238 ||||||||| | || || || ||| ||||| || Sbjct 39749 CATTGGAATCAATCCATTTGAATATCCGTTTGTACC 39714 >seq17288 Length=143976 Score = 127 bits (140), Expect = 3e-24 Identities = 399/613 (65%), Gaps = 4/613 (1%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || ||||| ||| || | |||||| ||||| ||| | || || || || |||||| Sbjct 116981 CAAGCAAAGTCAGTGTGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGA 116922 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 || ||||| || ||||| || || ||||| || |||| ||| ||||| || ||||| Sbjct 116921 CCTGGCATGAGGCCACGCTTCTTAAGCCAGAAGATTGAGCAGAAGGATCCTGAGAAGAAG 116862 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATC 48320 ||||| || | || || || || | |||||||| || | || || | ||| Sbjct 116861 ATGCCCTCGATAGCAGCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCGCTCTCACCAATC 116802 Query 48321 CACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCT-ATAGCATTAAA 48379 ||| ||||| ||||||||||| ||||| || || ||| | || || || || Sbjct 116801 CACTTAATGGCCCATTCAGCCTTCTTAGTTACAACTGGGAT-GTTAGTGATGGCTTTGAA 116743 Query 48380 GAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTC 48439 ||| || | || || | || | | | || || || | | || | || Sbjct 116742 GAGGAACTCCTTCTCGTGTGGGTCACTGATGAGGGTGTCGATGAGTACTGAGTAAGTCTC 116683 Query 48440 GGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTG 48499 |||||||| || || || ||| || || || || ||||| | ||||||| | || Sbjct 116682 TGAGTGAATGTTCTCCATCATCATTTGGAAGCCATAGAAACAGCGTGCTTCTGGAACTTG 116623 Query 48500 TACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAA 48559 | || ||||| |||| | || | ||||| || || ||||| || ||||| || Sbjct 116622 GATTTCAGTACAGAATCTCTGGGCGAGGTTCTCGTTGACGATTCCGTCTGAGGCAGCGAA 116563 Query 48560 AAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATT 48619 ||| || | || || || ||||| | | | |||||| | ||| | | ||| || || Sbjct 116562 AAAGGCAAGGACGTGCTTGATAAAGTGTCTCTCGTTGTCGTTGAGTCTCTCCCAATCCTT 116503 Query 48620 GATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCC-TCTGCTTTTTTAT 48678 | || | | | || | ||| |||| ||||| || | ||| |||| | || | Sbjct 116502 AACGTCGGTGGCGAGGTCGATTTCCTCAGAGGTCCAGAAAGCAGCCATCTGGTCCTTG-T 116444 Query 48679 ACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTTTTG 48738 |||| ||||| || || |||| | |||||| | ||||||||||| ||||| || | | Sbjct 116443 ACATCTTCCAGATGTCGTTGTACTTGATTGGAAGGATAACAAATCTGTTTGGGTTATCTT 116384 Query 48739 CAAGGATAGGTTC 48751 | || | ||| || Sbjct 116383 CGAGAAGAGGCTC 116371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694445463980800