Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1748 196 7e-45 >seq1748 Length=94692 Score = 196 bits (216), Expect = 7e-45 Identities = 482/726 (66%), Gaps = 20/726 (3%) Strand=Plus/Minus Query 76094 GCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCA 76153 |||||||| | ||| | || ||||| ||||| ||||| ||||| ||| ||| || | Sbjct 40459 GCATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGTGTCTAAGATTTGAATTTCTA 40400 Query 76154 GCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACT 76213 ||||| |||| ||| || ||||| |||||||||||||||| ||| |||| | | | || Sbjct 40399 GCTTCAGGAACAGGATAGTAATTGTTATCTATAATTTTATTTAGA-TTCTTAGTAATTCT 40341 Query 76214 -TTAACCACGTCCTTTAGTTTGAGAAAATCAAATT------TTCCATCTATCACAAACAT 76266 || ||||| | || || | ||||| ||| || | | || ||| || | Sbjct 40340 CTTGGTCACGTAATGTAACTTCTCATAATCATATTCTTAGGTTTCCTTTAACACGAATCT 40281 Query 76267 ATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTAT 76326 ||| | ||| ||||| ||||||||||| || || || |||| | | ||| | ||| | Sbjct 40280 ATTTAAAGCAATAGAAGCTAGATTACAGACAGCCACTTCATCTGGACTGGTAAATTCGAC 40221 Query 76327 TATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTT 76386 ||||| ||||| || ||| || ||| || || |||||||||| | |||| ||| | Sbjct 40220 GATCTCAGTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTGGATTTTCT 40161 Query 76387 GTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAAT 76446 || || | || || ||||| | | | ||||| ||||| || | || || || || || Sbjct 40160 ATTGCAAGCATCTTTGTAAAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGAT 40101 Query 76447 AGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCG-CTTCTCTC-----TTTC 76500 | ||||| |||||| | | | || ||| || | ||| | |||| Sbjct 40100 TTAACCCCAGAGCCATCTAGCCT---TAACAGTCTTG---CGACCTCTACCAGTGGTTTC 40047 Query 76501 ATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTC 76560 ||| | | || | ||||| || || ||||| | | | || || ||||| Sbjct 40046 ATACTCGATGTAAAGTTTCTCAAACTCCTCACCCCATGTAGTAGTAAGTCCTGGGCATTC 39987 Query 76561 ATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGG 76620 ||| |||||||| | | ||| || ||| | | | ||| | | |||| || ||||| || Sbjct 39986 ATTTGGACACATGAGAGTCCAATCTTCATTTGCTTCAACTCTTCTCATGAAAAGATCTGG 39927 Query 76621 TATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTT 76680 |||| ||||| || || |||| | |||| ||||| || || ||||||| | Sbjct 39926 AGTCCAAAGAGCGTAGAAAAGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTCT 39867 Query 76681 AAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACC 76740 || | ||||| || ||||||| ||||||||||| | ||| | || | | | || Sbjct 39866 GAGTTAAAGGAAGTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCTCC 39807 Query 76741 CGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACAT 76800 | || ||| ||| || | ||| | ||||| || |||| ||| |||| | ||||| Sbjct 39806 CTTTCTTTTTCCACCACCTTAATCCACGTATCTTGCGGTGTCATTGAAAACCTTTAACAT 39747 Query 76801 TGGAAT 76806 |||||| Sbjct 39746 TGGAAT 39741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712705191590400