Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq20086 125 2e-23 seq10467 125 2e-23 seq6376 125 2e-23 seq5238 125 2e-23 seq1293 125 2e-23 seq18779 123 6e-23 seq2143 123 6e-23 seq17194 113 1e-19 >seq20086 Length=32257 Score = 125 bits (138), Expect = 2e-23 Identities = 155/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| || |||||||||||||||||||| | || ||||| || ||||| | Sbjct 22178 CAAG-TGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCA 22120 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || ||||| || ||||| || || | | || ||||| || ||||||| Sbjct 22119 ACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAA 22060 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || | || | | | || ||| |||||| |||||||||||||| || | Sbjct 22059 TCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTAC 22000 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || | |||||| ||||||| || |||||| Sbjct 21999 CGGTCAAAGTCTTGACGAAGATCTACATTTT 21969 >seq10467 Length=17661 Score = 125 bits (138), Expect = 2e-23 Identities = 155/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| || |||||||||||||||||||| | || ||||| || ||||| | Sbjct 3817 CAAG-TGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCA 3759 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || ||||| || ||||| || || | | || ||||| || ||||||| Sbjct 3758 ACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAA 3699 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || | || | | | || ||| |||||| |||||||||||||| || | Sbjct 3698 TCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTAC 3639 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || | |||||| ||||||| || |||||| Sbjct 3638 CGGTCAAAGTCTTGACGAAGATCTACATTTT 3608 Score = 125 bits (138), Expect = 2e-23 Identities = 155/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| || |||||||||||||||||||| | || ||||| || ||||| | Sbjct 13837 CAAG-TGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCA 13895 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || ||||| || ||||| || || | | || ||||| || ||||||| Sbjct 13896 ACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAA 13955 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || | || | | | || ||| |||||| |||||||||||||| || | Sbjct 13956 TCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTAC 14015 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || | |||||| ||||||| || |||||| Sbjct 14016 CGGTCAAAGTCTTGACGAAGATCTACATTTT 14046 >seq6376 Length=13110 Score = 125 bits (138), Expect = 2e-23 Identities = 155/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| || |||||||||||||||||||| | || ||||| || ||||| | Sbjct 12215 CAAG-TGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCA 12157 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || ||||| || ||||| || || | | || ||||| || ||||||| Sbjct 12156 ACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAA 12097 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || | || | | | || ||| |||||| |||||||||||||| || | Sbjct 12096 TCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTAC 12037 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || | |||||| ||||||| || |||||| Sbjct 12036 CGGTCAAAGTCTTGACGAAGATCTACATTTT 12006 >seq5238 Length=45295 Score = 125 bits (138), Expect = 2e-23 Identities = 155/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| || |||||||||||||||||||| | || ||||| || ||||| | Sbjct 22026 CAAG-TGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCA 21968 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || ||||| || ||||| || || | | || ||||| || ||||||| Sbjct 21967 ACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAA 21908 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || | || | | | || ||| |||||| |||||||||||||| || | Sbjct 21907 TCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTAC 21848 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || | |||||| ||||||| || |||||| Sbjct 21847 CGGTCAAAGTCTTGACGAAGATCTACATTTT 21817 >seq1293 Length=7053 Score = 125 bits (138), Expect = 2e-23 Identities = 155/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| || |||||||||||||||||||| | || ||||| || ||||| | Sbjct 6504 CAAG-TGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCA 6446 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || ||||| || ||||| || || | | || ||||| || ||||||| Sbjct 6445 ACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAA 6386 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || | || | | | || ||| |||||| |||||||||||||| || | Sbjct 6385 TCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTAC 6326 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || | |||||| ||||||| || |||||| Sbjct 6325 CGGTCAAAGTCTTGACGAAGATCTACATTTT 6295 >seq18779 Length=42783 Score = 123 bits (136), Expect = 6e-23 Identities = 164/225 (73%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAG-T 151942 ||||||||||| || | ||||| || || || || ||||||||||| || |||| | | Sbjct 12676 CTGAGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCA-CTAAGGGT 12618 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 ||| || ||||| || || || |||||||| || || || || || | | |||||| Sbjct 12617 TCTTCCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGGATTCC 12558 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 |||||| ||||| || || |||||| | || | | |||| || ||| || || | Sbjct 12557 TTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACGTCCAA 12498 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||| || || ||||| ||||| ||||| ||||||| ||||| || Sbjct 12497 AGTGATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCATGTT 12453 Score = 122 bits (134), Expect = 2e-22 Identities = 161/219 (74%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAG-TTCTCC 151947 ||||||||| | ||||| || ||||| |||||||||||||| || |||| | |||| | Sbjct 12899 TCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCA-CTAAGGGTTCTTC 12841 Query 151948 CATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||||| || ||||| || || || || || || || || || | | || ||||| Sbjct 12840 CATCTTCAAGTTGCTTT--CCAGCAAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTC 12783 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || || ||||| | || | ||||||| ||| || |||||||| Sbjct 12782 CTTATCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCTGATGGCTCAACATCAAGAGT 12723 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| ||||||||||||| ||||| Sbjct 12722 GATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 12684 Score = 122 bits (134), Expect = 2e-22 Identities = 161/219 (74%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAA-AGTTCTCC 151947 ||||||||| | ||||| || ||||| |||||||||||||| || |||| ||||| | Sbjct 13127 TCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTC-ACTAAGGGTTCTTC 13069 Query 151948 CATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||||| || ||||| || || || || || || || || || | | ||| ||||| Sbjct 13068 CATCTTCAAGTTGCTTT--CCAGCAAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTC 13011 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || ||| |||||| |||| | | | |||||| ||| || || | || Sbjct 13010 CTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCGACGTCCAAGGT 12951 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || ||||| ||||||| ||||| Sbjct 12950 GATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 12912 Score = 120 bits (132), Expect = 7e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||||||||| | || ||||| ||||| |||||||||||||| |||| || ||| Sbjct 13360 CTAAGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTT 13301 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || ||||| || || || ||||||||||| || || || || | | ||| ||| Sbjct 13300 CTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGGATACCT 13241 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || | || || || || | || | | ||||||| ||| || || || Sbjct 13240 TCCTTGTCCTAGATCTTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAACATCGAGG 13181 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || || ||||| ||||||| ||||| Sbjct 13180 GTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 13140 >seq2143 Length=26640 Score = 123 bits (136), Expect = 6e-23 Identities = 164/225 (73%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAA-AGT 151942 ||||||||||| || | ||||| || || || || ||||||||||| || |||| || Sbjct 6505 CTGAGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTC-ACTAAGGGT 6563 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 ||| || ||||| || || || |||||||| || || || || || | | |||||| Sbjct 6564 TCTTCCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGGATTCC 6623 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 |||||| ||||| || || |||||| | || | | |||| || ||| || || | Sbjct 6624 TTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACGTCCAA 6683 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||| || || ||||| ||||| ||||| ||||||| ||||| || Sbjct 6684 AGTGATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCATGTT 6728 Score = 116 bits (128), Expect = 9e-21 Identities = 159/221 (72%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||||||||| | || ||||| ||||| |||||||||||||| |||| || ||| Sbjct 5791 CTAAGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTT 5850 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || ||||| || || || ||||||||||| || || || || | | ||| ||| Sbjct 5851 CTGCCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGGATACCT 5910 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || | || || || || | || | | ||||||| ||| || || || Sbjct 5911 TCCTTGTCCTAGATCTTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAACATCGAG- 5969 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || || ||||| ||||||| ||||| Sbjct 5970 GTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 6010 >seq17194 Length=120762 Score = 113 bits (124), Expect = 1e-19 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||||||||| | || ||||||||||| |||||||||||||| ||| |||||| Sbjct 43831 CTAAGTCTGAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTCAAAGTT 43890 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || ||||| || ||| ||||||||||| || || || || || | | || ||| Sbjct 43891 CTGCCGTCTTCAAGTTGTTTACCGGCGAAGATGAGTCTTTGTTGATCGGGTGGAATACCT 43950 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTC 152035 ||||| || || || || ||||||| |||| Sbjct 43951 TCCTTGTCCTGGATCTTGGCTTTGACATTCTC 43982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153440572778120