Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq20086 143 6e-29 seq10467 143 6e-29 seq6376 143 6e-29 seq5238 143 6e-29 seq1293 143 6e-29 seq18779 138 2e-27 seq2143 123 5e-23 seq17194 91.5 3e-13 >seq20086 Length=32257 Score = 143 bits (158), Expect = 6e-29 Identities = 151/196 (77%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAA 282966 |||||||||||||||||| |||| |||| || | ||| || || | | || || |||| Sbjct 22163 TTCTTTTTGGATGTTGTAATCAGACAAG-GTTCTGCCGTCTTCCAACTACTTTCCAGCAA 22105 Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGG 283026 |||| | | ||||| ||| |||||||| || |||||||| ||||| || || ||| Sbjct 22104 AGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTAACGT 22045 Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAA 283086 | ||||| || || |||| || || || ||||| || |||||||| ||||||||||| | Sbjct 22044 TTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTCTTGA 21985 Query 283087 CGAATATCTGCATTTT 283102 |||| |||| |||||| Sbjct 21984 CGAAGATCTACATTTT 21969 >seq10467 Length=17661 Score = 143 bits (158), Expect = 6e-29 Identities = 151/196 (77%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAA 282966 |||||||||||||||||| |||| |||| || | ||| || || | | || || |||| Sbjct 3802 TTCTTTTTGGATGTTGTAATCAGACAAG-GTTCTGCCGTCTTCCAACTACTTTCCAGCAA 3744 Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGG 283026 |||| | | ||||| ||| |||||||| || |||||||| ||||| || || ||| Sbjct 3743 AGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTAACGT 3684 Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAA 283086 | ||||| || || |||| || || || ||||| || |||||||| ||||||||||| | Sbjct 3683 TTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTCTTGA 3624 Query 283087 CGAATATCTGCATTTT 283102 |||| |||| |||||| Sbjct 3623 CGAAGATCTACATTTT 3608 Score = 143 bits (158), Expect = 6e-29 Identities = 151/196 (77%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAA 282966 |||||||||||||||||| |||| |||| || | ||| || || | | || || |||| Sbjct 13852 TTCTTTTTGGATGTTGTAATCAGACAAG-GTTCTGCCGTCTTCCAACTACTTTCCAGCAA 13910 Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGG 283026 |||| | | ||||| ||| |||||||| || |||||||| ||||| || || ||| Sbjct 13911 AGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTAACGT 13970 Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAA 283086 | ||||| || || |||| || || || ||||| || |||||||| ||||||||||| | Sbjct 13971 TTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTCTTGA 14030 Query 283087 CGAATATCTGCATTTT 283102 |||| |||| |||||| Sbjct 14031 CGAAGATCTACATTTT 14046 >seq6376 Length=13110 Score = 143 bits (158), Expect = 6e-29 Identities = 151/196 (77%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAA 282966 |||||||||||||||||| |||| |||| || | ||| || || | | || || |||| Sbjct 12200 TTCTTTTTGGATGTTGTAATCAGACAAG-GTTCTGCCGTCTTCCAACTACTTTCCAGCAA 12142 Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGG 283026 |||| | | ||||| ||| |||||||| || |||||||| ||||| || || ||| Sbjct 12141 AGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTAACGT 12082 Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAA 283086 | ||||| || || |||| || || || ||||| || |||||||| ||||||||||| | Sbjct 12081 TTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTCTTGA 12022 Query 283087 CGAATATCTGCATTTT 283102 |||| |||| |||||| Sbjct 12021 CGAAGATCTACATTTT 12006 >seq5238 Length=45295 Score = 143 bits (158), Expect = 6e-29 Identities = 151/196 (77%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAA 282966 |||||||||||||||||| |||| |||| || | ||| || || | | || || |||| Sbjct 22011 TTCTTTTTGGATGTTGTAATCAGACAAG-GTTCTGCCGTCTTCCAACTACTTTCCAGCAA 21953 Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGG 283026 |||| | | ||||| ||| |||||||| || |||||||| ||||| || || ||| Sbjct 21952 AGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTAACGT 21893 Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAA 283086 | ||||| || || |||| || || || ||||| || |||||||| ||||||||||| | Sbjct 21892 TTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTCTTGA 21833 Query 283087 CGAATATCTGCATTTT 283102 |||| |||| |||||| Sbjct 21832 CGAAGATCTACATTTT 21817 >seq1293 Length=7053 Score = 143 bits (158), Expect = 6e-29 Identities = 151/196 (77%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAA 282966 |||||||||||||||||| |||| |||| || | ||| || || | | || || |||| Sbjct 6489 TTCTTTTTGGATGTTGTAATCAGACAAG-GTTCTGCCGTCTTCCAACTACTTTCCAGCAA 6431 Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGG 283026 |||| | | ||||| ||| |||||||| || |||||||| ||||| || || ||| Sbjct 6430 AGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTAACGT 6371 Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAA 283086 | ||||| || || |||| || || || ||||| || |||||||| ||||||||||| | Sbjct 6370 TTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTCTTGA 6311 Query 283087 CGAATATCTGCATTTT 283102 |||| |||| |||||| Sbjct 6310 CGAAGATCTACATTTT 6295 >seq18779 Length=42783 Score = 138 bits (152), Expect = 2e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || |||||||||||||||||| ||| || | ||||| || ||||| || || ||||| Sbjct 12874 TCCTTTTGGATGTTGTAGTCACTAAGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAA 12815 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | | |||||| || |||||||| ||||| ||||||||||| || || ||| | Sbjct 12814 ATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTTATCTTGGATCTTGGCCTTGACGTTT 12755 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || |||||||| || | || || || |||||||| ||||| || || | ||||| ||| Sbjct 12754 TCAATAGTGTCTGATGGCTCAACATCAAGAGTGATGGTCTTTCCAGTGAGGGTCTTCACG 12695 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 12694 AAGATTTGCAT 12684 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || |||||||||||||||||| ||| || | ||||| || ||||| || || ||||| Sbjct 13102 TCCTTTTGGATGTTGTAGTCACTAAGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAA 13043 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | | |||||| || || ||||| |||||||||||||||||||| || || | Sbjct 13042 ATGAGTCTTTGTTGATCGGGTGGGATACCTTCCTTGTCTTGGATCTTTGCCTTGACATTC 12983 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || || || |||| ||||| || | ||||| ||||| || || | ||||| ||| Sbjct 12982 TCAATGGTATCTGAAGGCTCGACGTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACG 12923 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 12922 AAGATTTGCAT 12912 Score = 123 bits (136), Expect = 5e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| || ||||||||||||||| ||| || | || || || ||||| || || || || Sbjct 12647 TTCCTTCTGGATGTTGTAGTCACTAAGGGTTCTTCCGTCTTCGAGTTGCTTGCCAGCGAA 12588 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||| | | |||||| || || || || ||||||||||||||||| || || || | Sbjct 12587 GATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATT 12528 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||| ||||| || | || || || | |||||| ||||| || || | |||||||| Sbjct 12527 TTCGATGGTGTCAGAGGGCTCAACGTCCAAAGTGATGGTCTTGCCTGTGAGGGTCTTAAC 12468 Query 283088 GAATATCTGCATTTTCAT 283105 ||| || ||||| || || Sbjct 12467 GAAGATTTGCATGTTTAT 12450 Score = 118 bits (130), Expect = 2e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 || ||||||||||||||||| | |||| || | ||| || || ||||| || || || || Sbjct 13330 TCCTTTTGGATGTTGTAGTCGGACAAG-GTTCTGCCGTCTTCAAGTTGCTTACCAGCGAA 13272 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||| | | |||||| || || ||||| |||||||| | |||||| || || ||| | Sbjct 13271 GATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTGTCCTAGATCTTGGCCTTCACGTT 13212 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| || | || || ||||| ||||| ||||| || || | ||||| || Sbjct 13211 TTCAATGGTGTCTGATGGCTCAACATCGAGGGTGATGGTCTTTCCGGTAAGGGTCTTGAC 13152 Query 283088 GAATATCTGCAT 283099 ||| || ||||| Sbjct 13151 GAAGATTTGCAT 13140 >seq2143 Length=26640 Score = 123 bits (136), Expect = 5e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| || ||||||||||||||| ||| || | || || || ||||| || || || || Sbjct 6534 TTCCTTCTGGATGTTGTAGTCACTAAGGGTTCTTCCGTCTTCGAGTTGCTTGCCAGCGAA 6593 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||| | | |||||| || || || || ||||||||||||||||| || || || | Sbjct 6594 GATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATT 6653 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||| ||||| || | || || || | |||||| ||||| || || | |||||||| Sbjct 6654 TTCGATGGTGTCAGAGGGCTCAACGTCCAAAGTGATGGTCTTGCCTGTGAGGGTCTTAAC 6713 Query 283088 GAATATCTGCATTTTCAT 283105 ||| || ||||| || || Sbjct 6714 GAAGATTTGCATGTTTAT 6731 Score = 114 bits (126), Expect = 3e-20 Identities = 143/192 (74%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 || ||||||||||||||||| | |||| || | ||| || || ||||| || || || || Sbjct 5821 TCCTTTTGGATGTTGTAGTCGGACAAG-GTTCTGCCGTCTTCAAGTTGCTTACCAGCGAA 5879 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||| | | |||||| || || ||||| |||||||| | |||||| || || ||| | Sbjct 5880 GATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTGTCCTAGATCTTGGCCTTCACGTT 5939 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| || | || || ||||| ||||| ||||| || || | ||||| || Sbjct 5940 TTCAATGGTGTCTGATGGCTCAACATCGAG-GTGATGGTCTTTCCGGTAAGGGTCTTGAC 5998 Query 283088 GAATATCTGCAT 283099 ||| || ||||| Sbjct 5999 GAAGATTTGCAT 6010 Score = 87.8 bits (96), Expect = 4e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || |||||||||||||||||| ||| || | ||||| || ||||| || || ||||| Sbjct 6048 TCCTTTTGGATGTTGTAGTCACTAAGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAA 6107 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTT 283021 || | | |||||| || |||||||| ||||| ||||||||||| || || Sbjct 6108 ATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTTATCTTGGATCTTGGCCTT 6160 >seq17194 Length=120762 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || ||||||||||||||||| | || | ||| || || |||||||| ||||| ||| Sbjct 43861 TCCTTTTGGATGTTGTAGTCGCTCAAAGTTCTGCCGTCTTCAAGTTGTTTACCGGCGAAG 43920 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | | |||||| || |||||||| |||||||| |||||||| ||||| || | Sbjct 43921 ATGAGTCTTTGTTGATCGGGTGGAATACCTTCCTTGTCCTGGATCTTGGCTTTGACATTC 43980 Query 283029 TCGAT 283033 ||||| Sbjct 43981 TCGAT 43985 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 || ||||| || || |||||||||||||| || ||| | || |||||||| || | ||| Sbjct 44451 GGGATACCTTCTTTATCTTGGATCTTTGCCTTAACGTTTTCAATAGTGTCTGATGGCTCG 44510 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || ||||| ||||| || || | ||||||||||| || ||||| Sbjct 44511 ACGTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCAT 44560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046394260180880