Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq18779 120 2e-22 seq2143 116 3e-21 >seq18779 Length=42783 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-C 44169 || ||||| ||||| | |||| ||| || || |||||||||||||||||| |||| | Sbjct 13366 CCACCTCTAAGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGAC 13307 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || | || |||| || || ||||| || || ||||| | | || ||||| | || Sbjct 13306 AAGGTTCTGC-CGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGG 13248 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCAC 44289 | ||||||||| ||| ||||| ||||| || | |||||||| | | || || Sbjct 13247 GATACCTTCCTTGTCCTAGATCTTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAAC 13188 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || | || || |||||||| || |||||||| |||||||||||||| Sbjct 13187 ATCGAGGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 13140 Score = 109 bits (120), Expect = 4e-19 Identities = 167/236 (71%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| ||| | |||| |||||| || |||||||||||||||||| Sbjct 12917 TTGCATACCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTA 12858 Query 44164 ATCGGCGAGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 || || || || | || || || ||||| || ||||| || | | || ||| Sbjct 12857 GTCACTAAG--GGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGA 12800 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 || | || | ||||||||| || ||||| ||| | || | || ||||| | Sbjct 12799 TCGGGGGGAATACCTTCCTTATCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCTGAT 12740 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || || | || || |||||||| |||||||||||||||||||||||||| Sbjct 12739 GGCTCAACATCAAGAGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 12684 Score = 107 bits (118), Expect = 1e-18 Identities = 167/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||| ||||| | |||| |||||| || ||||| ||||||||||| Sbjct 12689 TTGCATACCTCCTCTGAGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTA 12630 Query 44164 ATCGGCGAGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 || || || || |||| || || ||||| || || ||||| | | || ||| Sbjct 12629 GTCACTAAG--GGTTCTTCCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGA 12572 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 || | || | |||||||| || ||||| ||| | || | |||||||| | | Sbjct 12571 TCGGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAG 12512 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || |||| || || ||||| || ||||||||||| ||||||||||||||| Sbjct 12511 GGCTCAACGTCCAAAGTGATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCATG 12455 Score = 104 bits (114), Expect = 2e-17 Identities = 168/237 (71%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| ||| | |||| |||||| || |||||||||||||||||| Sbjct 13145 TTGCATACCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTA 13086 Query 44164 ATCGGCGAGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 || || || || | || || || ||||| || ||||| || | | || ||| Sbjct 13085 GTCACTAAG--GGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGA 13028 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGC 44280 || | || | ||||||||| || ||||| ||| | | ||| | ||||| || | Sbjct 13027 TCGGGTGGGATACCTTCCTTGTCTTGGATCTT-TGCCTTGACATTCTCAATGGTATCTGA 12969 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || |||| || || |||||||| || |||||||| |||||||||||||| Sbjct 12968 AGGCTCGACGTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 12912 >seq2143 Length=26640 Score = 116 bits (128), Expect = 3e-21 Identities = 165/228 (72%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-C 44169 || ||||| ||||| | |||| ||| || || |||||||||||||||||| |||| | Sbjct 5785 CCACCTCTAAGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGAC 5844 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || | || |||| || || ||||| || || ||||| | | || ||||| | || Sbjct 5845 AAGGTTCTGC-CGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGG 5903 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCAC 44289 | ||||||||| ||| ||||| ||||| || | |||||||| | | || || Sbjct 5904 GATACCTTCCTTGTCCTAGATCTTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAAC 5963 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || | || || |||||||| || |||||||| |||||||||||||| Sbjct 5964 ATCGAG-GTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 6010 Score = 107 bits (118), Expect = 1e-18 Identities = 167/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||| ||||| | |||| |||||| || ||||| ||||||||||| Sbjct 6492 TTGCATACCTCCTCTGAGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTA 6551 Query 44164 ATCGGCGAGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 || || || || |||| || || ||||| || || ||||| | | || ||| Sbjct 6552 GTCACTAAG--GGTTCTTCCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGA 6609 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 || | || | |||||||| || ||||| ||| | || | |||||||| | | Sbjct 6610 TCGGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAG 6669 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || |||| || || ||||| || ||||||||||| ||||||||||||||| Sbjct 6670 GGCTCAACGTCCAAAGTGATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCATG 6726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359877556509240