Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq234 87.8 2e-12 >seq234 Length=113606 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 63721 AAAATAAAATTAAGATCTTCTAAAATACCAGAAATAGGTGATAAATTTGCTTCTTTTACA 63780 ||| ||||| | ||| | | ||| ||| |||| |||||||||||||| ||| | Sbjct 55270 AAAGTAAAAATGAGAGCAGTGAGAATTCCATAAATTGGTGATAAATTTGCCTCTCGTCAT 55211 Query 63781 GCTCAAAAAGGTACGTGTGGTATGATTTATCGACAAGAAGATATGCCTTTTACCAAAGAC 63840 | | |||||||||| |||||||||| |||| ||||||| ||| | || || || | ||| Sbjct 55210 GGTTAAAAAGGTACTTGTGGTATGACTTATAGACAAGAGGATCTACCATTCACTAGAGAA 55151 Query 63841 GGTATCGTACCCGATCTCGTCATCAATCCACACGCT 63876 ||| | || || ||| | | | ||||| || ||| Sbjct 55150 GGTGTAGTTCCAGATATGATTGTTAATCCTCATGCT 55115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 666860735323200