Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F000711775.1_202014-06-25] 25,720 sequences; 496,291,018 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq18779 156 1e-32 seq2143 156 1e-32 seq20086 116 9e-21 seq10467 116 9e-21 seq6376 116 9e-21 seq5238 116 9e-21 seq1293 116 9e-21 seq17194 105 2e-17 >seq18779 Length=42783 Score = 156 bits (172), Expect = 1e-32 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || |||||||| || || ||||| | || || || ||| ||| Sbjct 12459 CAAATCTTCGTTAAGACCCTCACAGGCAAGACCATCACTTTGGACGTTGAGCCCTCTGAC 12518 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| || ||||| ||||||||||| || || || ||| Sbjct 12519 ACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGATCAACAA 12578 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||| || || || |||||||| ||||| || ||| || || ||| || Sbjct 12579 AGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCCTTAGTGACTACAACATC 12638 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || |||||||| || || | ||| | ||||||||| Sbjct 12639 CAGAAGGAATCAACCCTTCACTTGGTTCTCAGACTCAGA 12677 Score = 147 bits (162), Expect = 5e-30 Identities = 166/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || ||||| || ||||||||||| || || |||||| Sbjct 13143 CAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCCTCGATGTTGAGCCATCAGAC 13202 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || ||||| ||||||| ||||| ||||| || || || ||| Sbjct 13203 ACCATTGAAAACGTGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATCAACAA 13262 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 ||||||||||||| || || || || ||||| || || || |||| |||| || ||| | Sbjct 13263 AGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAAC-CTTGTCCGACTACAACAT 13321 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||| || ||||| || || | || | ||||| ||| Sbjct 13322 CCAAAAGGAGTCAACTCTCCACTTGGTCCTCAGACTTAGA 13361 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || ||||| || |||||| | || || || ||||| Sbjct 12915 CAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGAGCCTTCAGAT 12974 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| ||||| |||||| || ||||| ||||| ||||| || || || ||| Sbjct 12975 ACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAACAA 13034 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || || || ||||| || || ||||||||||| || ||| || || ||| || Sbjct 13035 AGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAACATC 13094 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || ||||| || || |||| Sbjct 13095 CAAAAGGAGTCAACCCTTCA-CTTG 13118 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || ||||| ||||| || ||||| || || || || |||||| Sbjct 12687 CAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTCTTGATGTTGAGCCATCAGAC 12746 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| ||||| || || || ||||| || || || || || ||| Sbjct 12747 ACTATTGAAAACGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCCGATCAACAA 12806 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || || || ||||| || || ||||||||||| || ||| || || ||| || Sbjct 12807 AGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACAACATC 12866 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || ||||| || || |||| Sbjct 12867 CAAAAGGAGTCAACCCTTCA-CTTG 12890 >seq2143 Length=26640 Score = 156 bits (172), Expect = 1e-32 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || |||||||| || || ||||| | || || || ||| ||| Sbjct 6722 CAAATCTTCGTTAAGACCCTCACAGGCAAGACCATCACTTTGGACGTTGAGCCCTCTGAC 6663 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| || ||||| ||||||||||| || || || ||| Sbjct 6662 ACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGATCAACAA 6603 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||| || || || |||||||| ||||| || ||| || || ||| || Sbjct 6602 AGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCCTTAGTGACTACAACATC 6543 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || |||||||| || || | ||| | ||||||||| Sbjct 6542 CAGAAGGAATCAACCCTTCACTTGGTTCTCAGACTCAGA 6504 Score = 138 bits (152), Expect = 3e-27 Identities = 165/220 (75%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || ||||| || |||||| |||| || || |||||| Sbjct 6007 CAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACC-TCGATGTTGAGCCATCAGAC 5949 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || ||||| ||||||| ||||| ||||| || || || ||| Sbjct 5948 ACCATTGAAAACGTGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATCAACAA 5889 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 ||||||||||||| || || || || ||||| || || || |||| |||| || ||| | Sbjct 5888 AGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAAC-CTTGTCCGACTACAACAT 5830 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||| || ||||| || || | || | ||||| ||| Sbjct 5829 CCAAAAGGAGTCAACTCTCCACTTGGTCCTCAGACTTAGA 5790 Score = 84.2 bits (92), Expect = 5e-11 Identities = 116/157 (74%), Gaps = 9/157 (6%) Strand=Plus/Minus Query 177978 TCAGAC-ACC-ATCGAGAACGTCAAACAA----AAGATTCAGGACAAAGAAGGAATCCCT 178031 |||||| ||| || || ||||||| ||| ||||| || || || ||||| || || Sbjct 6185 TCAGACTACCTATTGAAAACGTCA--CAAGGCCAAGATCCAAGATAAGGAAGGTATTCCC 6128 Query 178032 CCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC 178091 || || || ||| |||| || || || ||||| || || ||||||||||| || ||| Sbjct 6127 CCCGATCAACAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGT 6068 Query 178092 GATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || || ||| ||||||| || ||||| || || |||| Sbjct 6067 GACTACAACATCCAAAAGGAGTCAACCCTTCA-CTTG 6032 >seq20086 Length=32257 Score = 116 bits (128), Expect = 9e-21 Identities = 150/203 (74%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 || ||||| || ||| | || || || || || || || || || || || || ||| Sbjct 21978 ATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCTTCTGATACC 22037 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 ||||| ||||| || |||||||| ||||||||||| || || || || || || || Sbjct 22038 ATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAACAGAGA 22097 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCA 178105 || ||||| || ||||| || | ||||| || || || |||| | ||||| ||| |||| Sbjct 22098 CTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAAC-CTTGTCTGATTACAACATCCA 22156 Query 178106 AAAAGAATCAACACTGCATCTTG 178128 |||||||||||| || || |||| Sbjct 22157 AAAAGAATCAACTCTCCA-CTTG 22178 >seq10467 Length=17661 Score = 116 bits (128), Expect = 9e-21 Identities = 150/203 (74%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 || ||||| || ||| | || || || || || || || || || || || || ||| Sbjct 3617 ATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCTTCTGATACC 3676 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 ||||| ||||| || |||||||| ||||||||||| || || || || || || || Sbjct 3677 ATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAACAGAGA 3736 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCA 178105 || ||||| || ||||| || | ||||| || || || |||| | ||||| ||| |||| Sbjct 3737 CTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAAC-CTTGTCTGATTACAACATCCA 3795 Query 178106 AAAAGAATCAACACTGCATCTTG 178128 |||||||||||| || || |||| Sbjct 3796 AAAAGAATCAACTCTCCA-CTTG 3817 Score = 116 bits (128), Expect = 9e-21 Identities = 150/203 (74%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 || ||||| || ||| | || || || || || || || || || || || || ||| Sbjct 14037 ATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCTTCTGATACC 13978 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 ||||| ||||| || |||||||| ||||||||||| || || || || || || || Sbjct 13977 ATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAACAGAGA 13918 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC-GATTATAACGTCCA 178105 || ||||| || ||||| || | ||||| || || || |||| | ||||| ||| |||| Sbjct 13917 CTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAAC-CTTGTCTGATTACAACATCCA 13859 Query 178106 AAAAGAATCAACACTGCATCTTG 178128 |||||||||||| || || |||| Sbjct 13858 AAAAGAATCAACTCTCCA-CTTG 13837 >seq6376 Length=13110 Score = 116 bits (128), Expect = 9e-21 Identities = 150/203 (74%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 || ||||| || ||| | || || || || || || || || || || || || ||| Sbjct 12015 ATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCTTCTGATACC 12074 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 ||||| ||||| || |||||||| ||||||||||| || || || || || || || Sbjct 12075 ATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAACAGAGA 12134 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCA 178105 || ||||| || ||||| || | ||||| || || || |||| | ||||| ||| |||| Sbjct 12135 CTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAAC-CTTGTCTGATTACAACATCCA 12193 Query 178106 AAAAGAATCAACACTGCATCTTG 178128 |||||||||||| || || |||| Sbjct 12194 AAAAGAATCAACTCTCCA-CTTG 12215 >seq5238 Length=45295 Score = 116 bits (128), Expect = 9e-21 Identities = 150/203 (74%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 || ||||| || ||| | || || || || || || || || || || || || ||| Sbjct 21826 ATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCTTCTGATACC 21885 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 ||||| ||||| || |||||||| ||||||||||| || || || || || || || Sbjct 21886 ATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAACAGAGA 21945 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCA 178105 || ||||| || ||||| || | ||||| || || || |||| | ||||| ||| |||| Sbjct 21946 CTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAAC-CTTGTCTGATTACAACATCCA 22004 Query 178106 AAAAGAATCAACACTGCATCTTG 178128 |||||||||||| || || |||| Sbjct 22005 AAAAGAATCAACTCTCCA-CTTG 22026 >seq1293 Length=7053 Score = 116 bits (128), Expect = 9e-21 Identities = 150/203 (74%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 || ||||| || ||| | || || || || || || || || || || || || ||| Sbjct 6304 ATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCCTTCTGATACC 6363 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 ||||| ||||| || |||||||| ||||||||||| || || || || || || || Sbjct 6364 ATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAACAGAGA 6423 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCA 178105 || ||||| || ||||| || | ||||| || || || |||| | ||||| ||| |||| Sbjct 6424 CTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAAC-CTTGTCTGATTACAACATCCA 6482 Query 178106 AAAAGAATCAACACTGCATCTTG 178128 |||||||||||| || || |||| Sbjct 6483 AAAAGAATCAACTCTCCA-CTTG 6504 >seq17194 Length=120762 Score = 105 bits (116), Expect = 2e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 |||||||| |||||| ||||| |||||||| ||||| || || || || || ||| || Sbjct 43985 ATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCACCCGATCAACAAAGA 43926 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 || ||||||||||| ||||| || ||||| || || ||| | ||| || ||| ||||| Sbjct 43925 CTCATCTTCGCCGGTAAACAACTTGAAGACGGCAGAACTTTGAGCGACTACAACATCCAA 43866 Query 178107 AAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || || | || | ||||| ||| Sbjct 43865 AAGGAGTCTACTCTCCACTTGGTCCTCAGACTTAGA 43830 Score = 105 bits (116), Expect = 2e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 || || || ||||| ||||| || |||||||| |||||||| || || || || || Sbjct 44722 ATTGAAAATGTCAAGGCTAAGATCCAAGACAAAGAGGGAATCCCACCCGATCAACAGAGA 44663 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 || || ||||| ||||||||| | ||||| || || || || |||| || ||| |||| Sbjct 44662 CTCATTTTCGCTGGAAAACAGTTGGAAGACGGCAGAACCCTCTCCGACTACAACATCCAG 44603 Query 178107 AAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || ||||| || || | || |||||||||||| Sbjct 44602 AAGGAGTCAACCCTTCACTTGGTCTTGAGACTCAGA 44567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203334525429680