Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq8715 107 4e-18 seq14742 86.0 1e-11 seq2080 86.0 1e-11 >seq8715 Length=1074 Score = 107 bits (118), Expect = 4e-18 Identities = 70/76 (92%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 ||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 832 GCTAGCCCGTCTAGCTCAGT-GGTAGAGCGCCAGACTTTTAATCTGGTGGTCGAGGGTTC 890 Query 165766 GAGCCCCACGATGGGC 165781 || |||| || ||||| Sbjct 891 GATCCCCTCGGTGGGC 906 >seq14742 Length=3183 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| | || |||| | ||||||| |||||||||| Sbjct 187 GCCCGTCTAGCTCAGTCGGTAGAGCGCTTGGCTCTTAACCAAGTGGTCGAGGGTTCGAGC 246 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 247 CCCTCGGTGGGC 258 >seq2080 Length=1364 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| | || |||| | ||||||| |||||||||| Sbjct 171 GCCCGTCTAGCTCAGTCGGTAGAGCGCTTGGCTCTTAACCAAGTGGTCGAGGGTTCGAGC 230 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 231 CCCTCGGTGGGC 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057519618416540