Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq14466 217 2e-51 seq1053 206 3e-48 seq22165 134 2e-26 >seq14466 Length=3412 Score = 217 bits (240), Expect = 2e-51 Identities = 609/927 (66%), Gaps = 22/927 (2%) Strand=Plus/Minus Query 53708 ATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 53767 || || || || || ||||| ||||| |||| | | || | || |||||| | Sbjct 1989 ATGGAAGCAAGGTTGCAAACAGCTACTTCATCTGGTGAGGTGTACTCGATAATCTCACAG 1930 Query 53768 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 53827 || | ||| || ||||||||||| | || | ||| || ||||| |||| | Sbjct 1929 CACAAATTGGAACTTTTGATGGTTCCGAGGTTCTTTTGGTTGCTCTTGCTGTTGGCGTGA 1870 Query 53828 TCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAG 53887 |||||||| | ||| |||| || |||||||| || || ||||| ||||| |||| ||| Sbjct 1869 TCCTTATACAACATGTATGGAGTTCCAGTTTCGATTTGTGATTCAATAATGGCTTCCCAA 1810 Query 53888 ACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGT--GTATACA 53945 | |||| || ||| | ||| || | || | || | ||| | || |||| Sbjct 1809 AGTTTTTGAGCTTTCATTGTC--TTTCTACCAATTCCTTATTGCTCATACTTAGTGTACA 1752 Query 53946 ATCGTTCAAACTCGTCTCCCCAAACATTGTCCAAT----CCAGGACATTCATCCGGACAC 54001 | ||| || || | || ||| ||| || || | | ||| | || || Sbjct 1751 GTGCTTCGAATTCTTAACCATGAAC---GTCGAAGAGGCCCTTGGC-TTCGTTGGGGCAG 1696 Query 54002 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 54061 | | | ||| ||||||||| | | |||| ||||| || | || |||||||| ||| Sbjct 1695 AAAAGTGTCCAGTCTCCGTCAGCTTGGACTCTCTTCATGAATAAGTCTGGAATCCAGAGA 1636 Query 54062 GCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 54121 || | || | ||||| | ||| |||||||| || || ||||||| | || | ||| Sbjct 1635 GCGAAGAACAAGTCTCTTGCTCTTTGTTCCTCTTTACCGTGATTCTTTCTTAGTTGAAGG 1576 Query 54122 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTG 54181 || | | | ||| | ||||| |||||||||||||| | | || | ||| Sbjct 1575 AAATCGAAGACATCTGCGTGCCATGGTTCCAAGTATATAGCGAATGAACCCTTTCTCTTG 1516 Query 54182 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 54241 ||||| || || | |||||||| || | ||| ||||||| | |||||| | | Sbjct 1515 CCACCTCCTTGGTCGACATATCTAGCAGTCTCATTGAAAACTCTGAGCATTGGCACGAGG 1456 Query 54242 CCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATT 54301 ||||| ||||||||| || ||| || || ||| | || | || || || Sbjct 1455 CCATTACTGTGACCATTGGTGCCCTTGATGTAACTGCCAGTAGCTCTGATGTTGTGAACA 1396 Query 54302 GATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG-TATCATA 54360 | ||||| | || || || ||| || || | |||| || | || | | ||||||| Sbjct 1395 GCCAGACCCACACCACCAGCTGATTTTGAAATCAGTGCG-ATGTTCTTGAGGGTATCATA 1337 Query 54361 GATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 54420 ||| || | || || ||| |||| |||| || || || || ||||||| | | Sbjct 1336 GATACCGTTGATTGAGTCGTCCTTCATCATAAGGAGGAAGCAACTGGACATTT----ATG 1281 Query 54421 ACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA 54476 || |||||| ||||| || || ||||||| ||| || ||||||||| | ||| | Sbjct 1280 GCTTGGGAGTTCCAGCATTGAACAAAGTAGGAGTAGCATGAGTAAACCATCTGTCACTCA 1221 Query 54477 GTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACAC 54536 || ||||| || || || ||||| || |||||| | || || ||||| | || | Sbjct 1220 TGAGGTTGTAAGTTTCAATGGCTGAATCGATATCCTTCTTGTGGATACCTACAGACACTC 1161 Query 54537 GCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATT 54596 ||| ||||||||||| ||||| ||||||||||| || | || | ||||||||| Sbjct 1160 TCATCAACATGTGCTGTGGTCTCTCAACGATCTTAGAATTGACCTTTAATAAGTAGGATC 1101 Query 54597 TTTCCAAAGTTTTAAAACCAAAATAGT 54623 | ||||| || ||||| || ||||||| Sbjct 1100 TCTCCAAGGTCTTAAATCCGAAATAGT 1074 >seq1053 Length=3228 Score = 206 bits (228), Expect = 3e-48 Identities = 734/1123 (65%), Gaps = 42/1123 (4%) Strand=Plus/Minus Query 53525 GCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTC- 53583 || ||||| ||||||| |||||||| || || ||||| ||||| ||| || ||||| Sbjct 1936 GCATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGTGTCTAAGATTTGA-ATTTCT 1878 Query 53584 AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTAC 53643 |||||| |||| |||||| ||||| |||||||||||||||| || || | |||| Sbjct 1877 AGCTTCAGGAACAGGATAGTAATTGTTATCTATAATTTTATTTAGATTCTTAGTAATTCT 1818 Query 53644 TTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTC------CATCTATTACAAACAT 53697 ||| ||| | | | || | ||||| ||| | | | || || || | Sbjct 1817 CTTGGTCACGTAATGTAACTTCTCATAATCATATTCTTAGGTTTCCTTTAACACGAATCT 1758 Query 53698 GTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 53757 || || |||||||| || || ||||| || || || |||| | | | | ||| | Sbjct 1757 ATTTAAAGCAATAGAAGCTAGGTTACAGACAGCCACTTCATCGGGACTGGTAAATTCGAC 1698 Query 53758 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 53817 |||||||||||||| ||| || ||| || || || | ||||| | ||| ||| | Sbjct 1697 GATCTCAGTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTAGATTTTCT 1638 Query 53818 GTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAAT 53877 || || ||||| || || || || | || |||||||| || | || || ||||| || Sbjct 1637 ATTGCAAGCATCTTTGTAGAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGAT 1578 Query 53878 CGCTTTCCAGACGACA-CGAGCCTTTA----TTATAGATTTGTATCTCTTTTCTCTTTCG 53932 ||||| | || | |||||| | || || | || | | |||| | | Sbjct 1577 TTAACCCCAGA-GCCATCTAGCCTTAACAGTTTTGCGACCTCTACCAGTGGTCTCATAC- 1520 Query 53933 TATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCA 53992 | | |||| | || |||||||| || ||||| | | | ||| || |||||| Sbjct 1519 TCGA-TGTAAAGTTTC--TCAAACTCCTCACCCCATGTAGTAGTAAGTCCTGGGCATTCA 1463 Query 53993 TCCGGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGG 54051 | |||||||||| | ||| ||| | | | ||||| ||| | |||| || ||||| || Sbjct 1462 TTTGGACACATCAGAGTCCAATCTTCATT-TGCTTCAACTCTTCTCATGAAAAGATCTGG 1404 Query 54052 AATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTT 54110 | |||||||||| || ||| || ||||| | ||||| || || || || ||||||| Sbjct 1403 AGTCCAAAGAGCGTAGAAA-AGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTC 1345 Query 54111 TAAGATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACT 54169 |||| | ||||| | | || ||||||| ||||| ||||| | || | | | | || Sbjct 1344 TAAGTTAAAGGAA-GTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCT 1286 Query 54170 CCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 54229 || | ||| || || | ||| | |||||| ||||||| ||| | || ||||| Sbjct 1285 CCCTTTCTTTTTCCACCACCTTAATCGACGTATCTTGCGGTGTCATTGAAGACCTTCAAC 1226 Query 54230 ATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGA 54289 |||||||| | ||||| || || || || || ||| ||| || || | | Sbjct 1225 ATTGGAATCAATCCATTTGAATATCCGTTTGTACCTCTGATGTAGGAGTCAGCAGCTCTA 1166 Query 54290 ATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 54349 | || | ||| | || || || || || || ||||| | || | |||| Sbjct 1165 ACATCGGACACTGACACTCCGATACCACCAGCAGCCTTTGAGATAATAGCAATTTATTTT 1106 Query 54350 AACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA-AG-TAGAAAACAGCTAG 54407 || || ||| |||| || || || || || | ||| || ||| || ||| || Sbjct 1105 AAAGTTTCAAAGATACCATCAATGGAGTCTTC-----TTTTACAGTTAGCAAGAAGCAAG 1051 Query 54408 A---CA--TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 54462 | || | |||| | ||||| | ||||| | ||||||| || || ||||| Sbjct 1050 AACTCATCTATGGTTTTG--GTGTTCCAGAGTTAAACAGAGTAGGAGTGGCATGAGTAAA 993 Query 54463 CCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAAT 54522 ||| || | | | || ||| ||||||| ||||| || | || || |||||| Sbjct 992 CCACAGTTGACTCATCAAATCGTAAGTCTCGAACGCTGACTCAAGGTCTTCTTTATGAAT 933 Query 54523 TCC--TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 54580 || |||| || | ||| | |||||| || ||||| |||| ||| | |||| | Sbjct 932 ACCAATACT--TACTCTCATAAGCATGTGTTGTGGTCTCTCAAGGATTTGGTTGCCATCT 875 Query 54581 TTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 54623 || || | ||| | | ||||||| ||| | ||||||||||||| Sbjct 874 TTAAGAAGGTAAGCTCTTTCCAATGTTCTGAAACCAAAATAGT 832 >seq22165 Length=1746 Score = 134 bits (148), Expect = 2e-26 Identities = 380/576 (66%), Gaps = 6/576 (1%) Strand=Plus/Plus Query 24155 ACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTT 24214 ||| |||||||| ||| | || || || || ||||| || ||||| ||||||||||| Sbjct 610 ACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGACCTGGCATGAGGCCACGCTT 669 Query 24215 TTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAA 24273 |||||||| || || || ||| || ||||| || ||||| || || || | || || | Sbjct 670 CTTAAGCCAGAAGATTGA-GCAGAAGGATCCTGAGAAGAAGATGCCCTCGATGGCAGCGA 728 Query 24274 AGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGG 24333 | ||||| ||||| || | | | ||||| ||| |||||||| ||||| || | Sbjct 729 AAGCAATTAGTCTCTCAGCGAAGCTAGCGCTCTCACCAATCCACTTAATGGCCCATTCAG 788 Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTAC 24393 ||||||| ||||| || || | || || || ||||| | | || || | Sbjct 789 CCTTCTTAGTTACAACTGGGATGTTAGTGATGGCTTTGAAGAGGAACTCCTTCTCGTGTG 848 Query 24394 TATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGG 24453 || | | || || || | | || | || || |||||||| || || Sbjct 849 GGTCACTGATGAGGGTGTCGATGAGTACTGAGTAAGTCTCTGAGTGAATGTTCTCCATCA 908 Query 24454 CCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTT 24513 |||||| || || |||||||| | || || | || || | ||| |||| |||| | Sbjct 909 TCATTTGGAAGCCATAGAAACAGCGTGCTTCTGGAACTTGGATTTCAGTACAGAATCTCT 968 Query 24514 CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 24573 || | || || || || |||||||| ||| || || || || | || || || | Sbjct 969 GGGCGAGGTTCTCGTTGACGATTCCGTCTGAGGCAGCGAAGAAAGCAAGGACGTGCTTGA 1028 Query 24574 TAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGATATATCC 24632 |||| | | | |||| || || ||| | | |||||| || | ||| | | | || Sbjct 1029 TAAAGTGTCTCTCGT-TGTCATTGAGTCTCTCCCAATCTTTAACATCAGTGGCGAGGTCG 1087 Query 24633 ACTTCTTCCACTGTCCAAAATGATGCC-TCTGCCTTTTTATACATATTCCAGATGTCATG 24691 | ||| || ||||| || | ||| |||| | || ||||| ||||||||||| | Sbjct 1088 ATTTCCTCAGAGGTCCAGAAAGCAGCCATCTG-GTCCTTGTACATCTTCCAGATGTCGTT 1146 Query 24692 ATATTGAATTGGAAAAATAACAAATCTATTTGGATT 24727 || | ||||||| ||||||||||| ||||| || Sbjct 1147 GTACTTGATTGGAAGGATAACAAATCTGTTTGGGTT 1182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593554927503840