Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq14202 107 2e-18 seq18203 89.7 4e-13 >seq14202 Length=1113 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | || |||||||||||||||||||| || ||||| ||| | ||| Sbjct 519 GATAAAGAAGGTATCCCACCCGATCAACAAAGACTTATCTTCGCCGGCAAGCAACTTGAA 578 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| | ||| | | || |||||||||||||| |||||||| |||||| |||| | Sbjct 579 GATGGAAGAACCCTTTCAGACTACAATATTCAAAAAGAATCTACCCTTCACTTGGTTCTT 638 Query 25248 CGATTACGAGGAGG 25261 |||| ||||||| Sbjct 639 AGATTGAGAGGAGG 652 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || || |||||| | || |||||||||||||| ||||| || || |||||| | ||| Sbjct 747 GACAAGGAAGGTATTCCACCCGATCAACAAAGACTCATCTTCGCCGGTAAACAACTTGAA 806 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 || || |||| || ||| ||||| || |||||||| |||||||| ||| |||| Sbjct 807 GACGGCAGAACTTTGAGCGACTACAACATCCAAAAGGAGTCTACTCTCCACTTGGT 862 >seq18203 Length=1365 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| || | || || || ||||| ||| || || || || Sbjct 634 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGAGCCTTCA 693 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| ||| || || || |||||| | || |||||| Sbjct 694 GATACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAA 753 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||||| ||||| || || || ||| | |||||| || |||| | | || ||||| Sbjct 754 CAAAGACTCATCTTCGCCGGAAAGCAACTTGAAGATGGCAGAACTCTTTCAGACTACAAC 813 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || || |||||||||||||| |||| | |||| |||| || Sbjct 814 ATCCAGAAAGAATCTACTCTTCATTTGGTCCTCAGATTGAGAGGTGG 860 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| || | || || || ||||| ||| ||| || || || Sbjct 862 ATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACCATCACCCTCGATGTTGAGCCATCA 921 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | ||| || || || || |||||| | || |||||| Sbjct 922 GACACCATTGAAAACGTGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATCAA 981 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||||||||||| || || || ||| | ||||| || ||| || |||| ||||| Sbjct 982 CAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACAAC 1041 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGT 25243 || |||||||| || ||||| ||| |||| Sbjct 1042 ATCCAAAAGGAGTCAACTCTCCACTTGGT 1070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410684362091612