Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq22165 163 3e-35 seq18203 122 9e-23 seq14202 120 3e-22 >seq22165 Length=1746 Score = 163 bits (180), Expect = 3e-35 Identities = 388/580 (67%), Gaps = 11/580 (2%) Strand=Plus/Minus Query 116633 GACATGTGGCGCATGTACAAAAAGGCCGA-GGCGTCGTTCTGGACCGTCGAGGAGGTGGA 116691 ||||| ||| |||||||| | | || ||| | ||||||||| ||||| | || Sbjct 1143 GACATCTGGAAGATGTACAAGGAC-CAGATGGCTGCTTTCTGGACCTCTGAGGAAATCGA 1085 Query 116692 CCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 ||| ||| || | || |||||| | | || ||||||||| | || || ||||| Sbjct 1084 CCTCGCCACTGATGTTAAAGATTGGGAGAGACTCAATGACAACGAGAGACACTTTATCAA 1025 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 |||||| || || || ||||| ||| ||||| |||||||||||||| || | | || | Sbjct 1024 GCACGTCCTTGCTTTCTTCGCTGCCTCAGACGGAATCGTCAACGAGAACCTCGCCCAGAG 965 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| | || | || || | || || || || ||||| ||||| || || || Sbjct 964 ATTCTGTACTGAAATCCAAGTTCCAGAAGCACGCTGTTTCTATGGCTTCCAAATGATGAT 905 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCG---CTCTTC 116928 ||||||| | ||||| || | || || ||||||||||| | | | | | Sbjct 904 GGAGAACATTCACTCAGAGACTTACTCAGTACTCATCGACACCCTCATCAGTGACCCACA 845 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 ||| || || ||| | || || |||||| | || || || | ||||||| Sbjct 844 CGAGAAGGAGTTCC---TCTTCAAAGCCATCACTAACATCCCAGTTGTAACTAAGAAGGC 788 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048 || ||||| | ||||| | | |||| | || |||| ||| | || | || Sbjct 787 TGAATGGGCCATTAAGTGGATTGGTG--AGAGCGCTAGC-TTCGCTGAGAGACTAATTGC 731 Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108 ||||| ||| |||||||| ||||||| || || ||| | | || || ||||| || Sbjct 730 TTTCGCTGCCATCGAGGGCATCTTCTTCTCAGGATCCTTCTGCTCAATCTTCTGGCTTAA 671 Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168 ||| || ||||||||||| || || || ||| || |||||||| || || ||||| || Sbjct 670 GAAGCGTGGCCTCATGCCAGGTCTCACCTTCTCAAATGAGCTCATTTCAAGAGACGAAGG 611 Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 | ||||| |||||||| || | || | |||||| ||| Sbjct 610 TATGCATACTGACTTTGCTTGCCTCCTCTACAAGCACTTG 571 >seq18203 Length=1365 Score = 122 bits (134), Expect = 9e-23 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| |||||||| ||||| || || ||||| ||||| |||||||| | ||||| || | Sbjct 174 AAACATGCAAATCTTCGTTAAGACCCTCACAGGCAAGACCATCACTTTGGACGTTGAGCC 233 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | | |||| | | ||| |||||| || || | ||||| || || ||||| | || Sbjct 234 CTCTGACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGA 293 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 || ||| ||||||||| ||| ||||| || || || |||| | ||| | |||||| Sbjct 294 TCAACAAAGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCTTGTCCGACTA 353 Query 40866 CAACATCCAGAAGGA 40880 ||||||||||||||| Sbjct 354 CAACATCCAGAAGGA 368 Score = 104 bits (114), Expect = 2e-17 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || ||||||||| |||| || || |||| | Sbjct 862 ATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACCATCACCCTCGATGTTGA-GCCATC 920 Query 40750 -GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | ||||| | |||| || || ||||| || || ||||| | || | Sbjct 921 AGACACCATTGAAAACG-TGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATC 979 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||| |||| |||| ||| || || || || || |||| | ||| | |||||||| Sbjct 980 AACAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACA 1039 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||| |||||| | || || || Sbjct 1040 ACATCCAAAAGGAGTCAACTCTCCA 1064 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || |||||||| | ||||| || |||| | Sbjct 406 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTTTGGACGTTGA-GCCATC 464 Query 40750 -GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | ||||| |||||| || || | || || || || || ||| | || | Sbjct 465 AGACACTATTGAAAACG-TCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCCGATC 523 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||| ||||||| | || || || || || || || | | ||||| | ||||||| Sbjct 524 AACAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAGTGACTACA 583 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||| |||||| | || || || Sbjct 584 ACATCCAAAAGGAGTCAACCCTTCA 608 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || || || ||||||||| | |||||||| | | Sbjct 634 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGAGCCTTCA 693 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||||| ||| || | ||||| || || ||||| | || || Sbjct 694 GATACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAA 753 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| ||||||||| ||| || || || || || || | | || || ||||||||| Sbjct 754 CAAAGACTCATCTTCGCCGGAAAGCAACTTGAAGATGGCAGAACTCTTTCAGACTACAAC 813 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| || | || || ||| | || | | ||||| || || Sbjct 814 ATCCAGAAAGAATCTACTCTTCATTTGGTCCTCAGATTGAGAGGTGG 860 >seq14202 Length=1113 Score = 120 bits (132), Expect = 3e-22 Identities = 153/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||| |||| ||||| || || ||||| ||||| |||||||| | || || || || Sbjct 194 AAACATGTAAATTTTCGTTAAGACTCTCACTGGCAAGACCATCACTCTTGATGTTGA-GC 252 Query 40746 CACC-GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || | || | | | ||| |||||| || || | ||||||||||| ||||| | | Sbjct 253 CATCAGATACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAAGAGGGAATCCCACCCG 312 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | || || ||||||| | ||| || || ||| |||| |||| | |||||| ||||| Sbjct 313 ATCAACAGAGACTCATTTTCGCTGGAAAGCAGTTGGAAGACGGCAGAACCCTCTCCGACT 372 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||||||| | || || || Sbjct 373 ACAACATCCAGAAGGAGTCAACCCTTCA 400 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||| | || ||||| || || | || || || || ||||| | ||||||||| | || Sbjct 654 ATGTAGATCTTCGTGAAGACCTTGACCGGTAAGACTATCACTTTGGACGTCGAACCATCC 713 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| | || || | ||||| || || || || | || || Sbjct 714 GACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCACCCGATCAA 773 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| ||||||||| ||| || ||||| || || |||| | || | | |||||||||| Sbjct 774 CAAAGACTCATCTTCGCCGGTAAACAACTTGAAGACGGCAGAACTTTGAGCGACTACAAC 833 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 ||||| |||||| | || || || Sbjct 834 ATCCAAAAGGAGTCTACTCTCCA 856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515074565090080