Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq4291 140 2e-28 >seq4291 Length=4287 Score = 140 bits (154), Expect = 2e-28 Identities = 313/465 (67%), Gaps = 9/465 (2%) Strand=Plus/Minus Query 97008 TGGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATA 97067 ||||||||| || || | |||| | |||| || | |||| ||||| ||| Sbjct 1575 TGGGAAAGGATATGGGTATCTCTTAAGTTACTCTTGAAGTGGTTCAACATGATTTTTATA 1516 Query 97068 AATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTG-ACATGGG 97126 | |||||||| ||||| ||||| || ||||| | |||| | || || | Sbjct 1515 TACATGAGCATCACCTAATACATGAATGAACTCTCCTCTCT-TCAATCCGCACACTTGTG 1457 Query 97127 CGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATAT 97186 | | ||| || ||||| | ||||| || |||||||| ||||| | || || ||||||| Sbjct 1456 CAAGCATGCAGGTTAACAATGAATAACTCGCAATGTTGAAAGGAATACCAAGACCCATAT 1397 Query 97187 CAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCAT---CACACACATAAAACTGAC 97243 || ||||||||||| | || |||||||||||||||| || | |||||||| | | Sbjct 1396 CACAAGATCTTTGATACATTTGGCAGGAAAGCTTTCCATCAGCAGAAACATAAAATTAAG 1337 Query 97244 TCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACA 97303 || | || ||||| || | ||||| ||| || ||| | |||||||||| || Sbjct 1336 CTAAAATGTGGCAGGGAGGAAGAGCCATGTTTTTAAGATCAGCAGCGTTCCAAGCACTCA 1277 Query 97304 TCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTA--TCTGCTTTAATTG 97361 ||| |||||||| |||||| || | | | |||||| | || || |||| Sbjct 1276 TCACAATTCTTCTGCTGGTTGGATTGTTCTTCAACTGATTAATGACGTCAGC--CAATTA 1219 Query 97362 ATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCT 97421 |||| |||| ||| |||| || | | || ||| | |||||||| || || Sbjct 1218 GTCAAATCCTTTTCCTGTGTAATCGTCGTGCATTGTTTCATAAGCAGCTCCAAAGTGTCT 1159 Query 97422 CCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATC 97466 ||||| ||| ||||| || || || || || | ||||||||||| Sbjct 1158 CCATTAGAACCCATAGACTGGCCCGAGATCCCACTCTTCTCTATC 1114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346689082835060