Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq2220 129 9e-25 seq14202 107 3e-18 seq533 100 4e-16 seq18203 98.7 1e-15 >seq2220 Length=3178 Score = 129 bits (142), Expect = 9e-25 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 124543 AAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATA 124602 || ||||| | || || |||||||||||||||| || || | | | | || |||| | Sbjct 900 AATTATTTGTCAAAACCTTAACAGGCAAAACTATCACAATCTATACTAACTCAGATGAGA 841 Query 124603 CAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAA 124662 | ||| | || |||| |||||| |||||||||| || || |||||||| ||||||| Sbjct 840 CCATTGAAGAATTTAAACTTAAAATTTAAGATAAAGAGGGCATTCCACCTGACCAACAAA 781 Query 124663 GGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTC 124722 | || ||||||||||| | ||||||| ||| | |||| | | ||| || || |||| Sbjct 780 GACTCATTTTTGCAGGTATGTAATTAGAAGATGGAAGAACTCTGGGAGACTACAACATTC 721 Query 124723 AAAAAGAATCAACTTTGCATTTGGTT 124748 ||| || || || ||||||||||| Sbjct 720 AAACTGAGTCCACACTGCATTTGGTT 695 >seq14202 Length=1113 Score = 107 bits (118), Expect = 3e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| || || || || || || || | || | || || Sbjct 426 ATGCAAATCTTCGTTAAGACCCTTACCGGAAAGACCATCACCCTTGACGTCGAGCCATCA 485 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || |||| || || || ||||||||||||||||| ||||| ||||| Sbjct 486 GACACCATTGAAAACGTTAAGGCA-AAGATCCAAGATAAAGAAGGTATCCCACCCGATCA 544 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| ||||| || || || || ||| | || ||| | |||| | ||| || || Sbjct 545 ACAAAGACTTATCTTCGCCGGCAAGCAACTTGAAGATGGAAGAACCCTTTCAGACTACAA 604 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||||||| || | || |||||| | | || |||| ||||| Sbjct 605 TATTCAAAAAGAATCTACCCTTCACTTGGTTCTTAGATTGAGAGGAGGTAT 655 >seq533 Length=4588 Score = 100 bits (110), Expect = 4e-16 Identities = 123/167 (74%), Gaps = 1/167 (1%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || |||||||| ||||||||||| || ||||||||||| || || || ||||| ||||| Sbjct 4359 AAGATTCAAGACAAAGAAGGTATTCCCCCTGATCAACAGAGACTCATCTTTGCTGGAAAG 4300 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 | || || || | |||| || ||||| || || ||||||||||||||| | || Sbjct 4299 TAGTTGGAAGACGGCAGAACCTTGTCTGATTACAACATCCAAAAAGAATCAACTCTCCAC 4240 Query 124743 TTGGTTTTACGTTTACGAGGTGGTATTAAAAATT-CATAAAAATTGA 124788 ||||| || | | |||||||| | || || ||| ||||||| Sbjct 4239 TTGGTCTTGAGACTTAGAGGTGGTGGTCAAGGTTCCATCCAAATTGA 4193 >seq18203 Length=1365 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| || || || || || || ||| | || |||| || Sbjct 406 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTTTGGACGTTGAGCCATCA 465 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | || || || |||||||| |||||||| || || |||||| Sbjct 466 GACACTATTGAAAACGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCCGATCAA 525 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAA-CATTAGAAGATTATAA 124717 ||||| || |||||||| ||||| ||| | || ||| | ||| | |||| || || || Sbjct 526 CAAAGACTCATTTTTGCTGGAAAGCAACTTGAAGATGGAAGAACCCTTAG-TGACTACAA 584 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || ||||| | || ||||| | | || |||||||||| Sbjct 585 CATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCAGATTGAGAGGTGGTAT 635 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| || || || || || || || | || | || | Sbjct 634 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGAGCCTTCA 693 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || || || ||||| || |||||||| ||||| |||||| Sbjct 694 GATACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAA 753 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| || || || || ||||| ||| | || ||| | |||| | ||| || || Sbjct 754 CAAAGACTCATCTTCGCCGGAAAGCAACTTGAAGATGGCAGAACTCTTTCAGACTACAAC 813 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| ||| | |||||||| | | || |||||||||| Sbjct 814 ATCCAGAAAGAATCTACTCTTCATTTGGTCCTCAGATTGAGAGGTGGTAT 863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755243924614400