Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq533 98.7 9e-16 seq14202 91.5 1e-13 >seq533 Length=4588 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/229 (70%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582 |||||| |||||||||| || || |||||||| ||||||||||| || || | Sbjct 4228 TCTCAAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCC 4287 Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 || || | || |||||||| ||||||| | ||| ||||| || || || || || || Sbjct 4288 GTCTTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTT 4347 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 |||| ||| || ||||| | ||||| ||| || | ||| || || | || | Sbjct 4348 GTCTTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAAT 4407 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATTCTATT 118751 || || ||||||| ||| || || || |||| ||| || ||||||| Sbjct 4408 AGTCTTACCGGTCAAAGTCTTGACGAAGATCTACAT-TTTTCTTCTATT 4455 >seq14202 Length=1113 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| | ||||| | |||||||| | ||||| ||||||||||| ||||| | | Sbjct 654 TACCTCCTCTCAATCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGAATATTGTAGT--C 597 Query 118570 TCATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGG 118627 | | || | | | ||| || || || || || ||| |||| || | || |||||||| Sbjct 596 TGAAAGGGTTCTTCCATCTTCAAGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGATCGGG 537 Query 118628 AGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTC 118687 || || || || || ||| || ||| ||||| | ||| | |||||| | ||| Sbjct 536 TGGGATACCTTCTTTATCTTGGATCTTTGCCTTAACGTTTTCAATGGTGTCTGATGGCTC 477 Query 118688 GACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || | ||| | || || ||||| || || || || || || ||||| Sbjct 476 GACGTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCAT 426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433711657636936