Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq14202 87.8 1e-12 seq18203 86.0 4e-12 >seq14202 Length=1113 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||||||||| || | | |||| ||||||||||| || |||||| Sbjct 388 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCTGCCGTCTTCCAACTGCTTTCCAGCGAAA 329 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| | ||| || ||| || | | ||| ||||| ||||| ||| | || Sbjct 328 ATGAGTCTCTGTTGATCGGGTGGGATTCCCTCTTTGTCTTGGATCTTAGCCTTGACATTT 269 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | | || || || | |||||||| ||||| |||||||| || || Sbjct 268 TCAATGGTATCTGATGGCTCAACATCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTAACG 209 Query 34379 AAGATCTGCAT 34389 || || | ||| Sbjct 208 AAAATTTACAT 198 >seq18203 Length=1365 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34175 CTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCG 34234 || || |||| || | |||| ||||||||| ||||||||||| || || | | | Sbjct 848 CTGAGGACCAAATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCTGAAAGAGTTCTGCCA 789 Query 34235 TCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTG 34294 || || | ||||| || ||||| ||||| | || || ||| || | | |||||| Sbjct 788 TCTTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGTTGATCGGGTGGGATACCTTCCTTG 729 Query 34295 TCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATG 34354 || |||||| ||| | || | || | ||| | | |||||||||| |||||| Sbjct 728 TCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCGACGTCCAAGGTGATG 669 Query 34355 GTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || ||||| || || || || ||||| ||||| Sbjct 668 GTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322983572972480