Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq4291 118 8e-22 >seq4291 Length=4287 Score = 118 bits (130), Expect = 8e-22 Identities = 235/347 (68%), Gaps = 11/347 (3%) Strand=Plus/Plus Query 20213 AAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATG 20272 ||||| ||||| | || || || ||||| || |||||||||| |||||||||| |||| Sbjct 1121 AAGAGTGGGATCTCGGGCCAGTCTATGGGTTCTAATGGAGACACTTTGGAGCTGCTTATG 1180 Query 20273 TTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATT 20332 ||| || |||| ||| ||||| | || |||| | || |||||| Sbjct 1181 AAACAATGCACGACGATTACACAGGAAAAGGATTTGACTAATTGGCTGACGTCATTAATC 1240 Query 20333 TAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATG 20392 | || | || |||| | |||||||||| | | | || ||||||||| ||| Sbjct 1241 AGTTGAAGAACAATCCAACCAGCAGAAGAATTGTGATGAGTGCTTGGAACGCTGCTGAT- 1299 Query 20393 TGCCTTTAA----TGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAAT 20448 ||| || ||||| | ||||| || || || || ||||||| ||| || | Sbjct 1300 ---CTTAAAAACATGGCTCTTCCTCCCTGCCACATTTTAGCTTAATTTTATGTTTCTGCT 1356 Query 20449 AATGAATTG---TCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCT 20505 ||| | | || || |||||||||||| |||| ||||||||| || ||| ||||| Sbjct 1357 GATGGAAAGCTTTCCTGCCAAATGTATCAAAGATCTTGTGATATGGGTCTTGGTATTCCT 1416 Query 20506 TTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGT 20552 ||||| ||||| |||||| | || | || | ||| ||||||| || Sbjct 1417 TTCAACATTGCGAGTTATTCATTGTTAACCTGCATGCTTGCACAAGT 1463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399074740594810