Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq14466 140 7e-28 >seq14466 Length=3412 Score = 140 bits (154), Expect = 7e-28 Identities = 395/601 (66%), Gaps = 7/601 (1%) Strand=Plus/Plus Query 248875 AAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGAT 248934 |||||||| || || ||||||||||||||| ||||| |||| || || |||||| | Sbjct 1127 AAGATCGTTGAGAGACCACAGCACATGTTGATGAGAGTGTCTGTAGGTATCCACAAGAAG 1186 Query 248935 GACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCC 248994 || || || | | || || |||| | |||||||| | ||| | || ||||| Sbjct 1187 GATATCGATTCAGCCATTGAAACTTACAACCTCATGAGTGACAGATGGTTTACTCATGCT 1246 Query 248995 ACACCGACGCTCTTCAACGCCGGTACCGTCAA-CAATCAGCTGAGCTCGTGCTTTCTTCT 249053 || || || | ||||| || || || ||| | || | || | ||||| || || Sbjct 1247 ACTCCTACTTTGTTCAATGCTGGAACTCCCAAGCCAT-AAATGTCCAGTTGCTTCCTCCT 1305 Query 249054 TGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGAT 249113 | ||| | |||||||| || |||| || ||||| || || || | | || ||| Sbjct 1306 TATGATGAAGGACGACTCAATCAACGGTATCTATGATACCCTCAAGAACATCGCACTGAT 1365 Query 249114 TTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTA 249173 ||| |||| || || || | ||||| | || ||||||| |||| | || || Sbjct 1366 TTCAAAATCAGCTGGTGGTGTGGGTCTGGCTGTTCACAACATCAGAGCTACTGGCAGTTA 1425 Query 249174 CATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGT- 249232 |||||| || || ||||| |||| |||| |||| || | || || | ||| | | Sbjct 1426 CATCAAGGGCACCAATGGTCACAGTAATGGCCTCGTGCCAATGCTCAGA-GTTTTCAATG 1484 Query 249233 CCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATT 249289 || || || | || |||| | || || ||||||| || ||||| || || | Sbjct 1485 AGACTGCTAGATATGTCGACCAAGGAGGTGGCAAGAGAAAGGGTTCATTCGCTATATACT 1544 Query 249290 TGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACG 249349 ||||| |||||||| ||| | || || ||||| | | | |||||| |||| || | Sbjct 1545 TGGAACCATGGCACGCAGATGTCTTCGATTTCCTTCAACTAAGAAAGAATCACGGTAAAG 1604 Query 249350 AGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCC 249409 || ||||| | ||| | |||| || || ||| | | ||||| |||||| Sbjct 1605 AGGAACAAAGAGCAAGAGACTTGTTCTTCGCTCTCTGGATTCCAGACTTATTCATGAAGA 1664 Query 249410 GCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCATCG 249469 | ||| | || ||||| || ||||| ||| | | || ||| ||| || |||| ||| Sbjct 1665 GAGTCCAAGCTGACGGAGACTGGACACTTTTCTGCCCCAACGAAGCCAAGGGCCTCTTCG 1724 Query 249470 A 249470 | Sbjct 1725 A 1725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073457431100544