Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq11726 107 3e-18 >seq11726 Length=9537 Score = 107 bits (118), Expect = 3e-18 Identities = 145/201 (72%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 73908 ATTGTTCATAGATATCTTCAAAATGGAGATATACTAGTGCTAAATAGACAACCTACTTTA 73967 || ||| | ||| || | ||||||||||| || || || | || || ||||||| |||| Sbjct 4644 ATAGTTGAGAGACATTTAGAAAATGGAGATGTAGTATTGTTCAACAGGCAACCTAGTTTA 4585 Query 73968 CATAAAGCATCAATGATGGCTCTTCGAGTTAAAATTATGGATGTAAAAACCTTTAAATTT 74027 |||| || ||||| ||||||| | ||| | | ||||| || ||| || | |||| Sbjct 4584 CATAGAGTCTCAATTATGGCTCATAGAGCAAGAGTTATGCCATCAAGAACTTTAAGATTT 4525 Query 74028 AATCTTGCATGC---ACTAAACCATATAATGCAGATTTTGATGGAGATGAAATGAATGCT 74084 || | |||| || || |||||||||||||||||||| |||||||||||| Sbjct 4524 AA---CGAATGCGTTTGTACTCCTTATAATGCAGATTTTGATGGTGATGAAATGAATATA 4468 Query 74085 CATGCGCCTCAATCAGAAGAA 74105 ||| ||| |||| |||||| Sbjct 4467 CATTTACCTTAATCTGAAGAA 4447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679623559102560