Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq14202 125 5e-24 seq18203 116 3e-21 seq2220 89.7 4e-13 seq533 89.7 4e-13 >seq14202 Length=1113 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | | |||||| |||| |||||| || |||||||||||||| |||||||| | Sbjct 652 CCTCCTCTCAATCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGAATATTGTAGTCTGAA 593 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | |||||| | ||| ||||| || ||||||||||||||||||| || Sbjct 592 AGGGTTCTTCCATCTTCAAGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGATCGGGTGGG 533 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| ||||| || | | ||| || | | ||| ||||| |||||| Sbjct 532 ATACCTTCTTTATCTTGGATCTTTGCCTTAACGTTTTCAATGGTGTCTGATGGCTCGACG 473 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| | || ||||| | || || || || |||||||| Sbjct 472 TCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCAT 426 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| || |||| ||| || || || || ||||| |||||||||||| || ||| | Sbjct 871 AGTCTGAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTCAAAGTTCTG 812 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | ||||| | |||||| || || |||| |||||||||||||| || | |||||| Sbjct 811 CCGTCTTCAAGTTGTTTACCGGCGAAGATGAGTCTTTGTTGATCGGGTGGAATACCTTCC 752 Query 18228 TTATC 18232 || || Sbjct 751 TTGTC 747 >seq18203 Length=1365 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | ||||| || |||| |||||| |||||||| || || ||||||||||||| | Sbjct 404 CCTCCTCTGAGTCTGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAC 345 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | ||||| | ||| ||||| || |||| |||||||||||||| || Sbjct 344 AAGGTTCTTCCGTCTTCGAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGG 285 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||| || || | |||||| | | | | |||||| |||||| Sbjct 284 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACG 225 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTA 18330 || | |||||| | ||||| || | || || || || |||||||| |||| Sbjct 224 TCCAAAGTGATGGTCTTGCCTGTGAGGGTCTTAACGAAGATTTGCATGTTTA 173 Score = 104 bits (114), Expect = 2e-17 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| || |||| ||| || ||||| || ||||| ||||||||||||| || ||| | Sbjct 1079 AGTCTGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTG 1020 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | ||||| | ||| || || || ||||||||||||||||||| || | |||||| Sbjct 1019 CCGTCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGTTGATCGGGTGGGATACCTTCC 960 Query 18228 TTATCGGCAATTTGTTG--CTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGG 18285 || || | | | ||| ||| || | | ||| ||||| ||||| || | || Sbjct 959 TTGTC--CTAGATCTTGGCCTTCACGTTTTCAATGGTGTCTGATGGCTCAACATCGAGGG 902 Query 18286 TGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| | || ||||| | || || || || |||||||| Sbjct 901 TGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 862 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 18110 TCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACA 18169 ||| || |||| |||||| ||||| || ||||| ||||||||||| | ||| | | Sbjct 621 TCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTAAGGGTTCTTCC 562 Query 18170 ATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTT 18229 |||||| | ||| || || ||| | || |||||||||||||| ||| | |||||||| Sbjct 561 ATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTT 502 Query 18230 ATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGAT 18289 ||| || | |||||| | | ||| |||||| ||||| || | ||||| Sbjct 501 ATCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCTGATGGCTCAACGTCCAAAGTGAT 442 Query 18290 GCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | | || || || | || || || || |||||||| Sbjct 441 GGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 406 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 18110 TCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACA 18169 ||| || |||| ||||| || |||||||| || ||||||||||| | | ||| | | Sbjct 849 TCTGAGGACCAAATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCTGAAAGAGTTCTGCC 790 Query 18170 ATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTT 18229 |||||| | ||| || || || |||| |||||||||||||| || | |||||||| Sbjct 789 ATCTTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGTTGATCGGGTGGGATACCTTCCTT 730 Query 18230 ATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGAT 18289 || || | | |||||| | ||| || || |||||| || | |||||| Sbjct 729 GTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCGACGTCCAAGGTGAT 670 Query 18290 GCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | | || ||||| | || || || || |||||||| Sbjct 669 GGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 634 >seq2220 Length=3178 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/214 (70%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 |||||||| |||| || ||||| || || |||||||||||||||| ||| ||| | Sbjct 687 AGTCTAAGAACCAAATGCAGTGTGGACTCAGTTTGAATGTTGTAGTCTCCCAGAGTTCTT 746 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||| |||| | || ||| | || ||||||||||| || || | ||| || Sbjct 747 CCATCTTCTAATTACATACCTGCAAAAATGAGTCTTTGTTGGTCAGGTGGAATGCCCTCT 806 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 ||||| ||||| | || | | | ||| || ||| | | | || | || ||| Sbjct 807 TTATCTTAAATTTTAAGTTTAAATTCTTCAATGGTCTCATCTGAGTTAGTATAGATTGTG 866 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAA-AATT 18320 || ||||||| || || ||||| ||||| |||| Sbjct 867 ATAGTTTTGCCTGTTAAGGTTTTGACAAATAATT 900 >seq533 Length=4588 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| | |||| ||| || |||||||||||||| |||||||| || | || ||| | Sbjct 4226 AGTCTCAAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTG 4285 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||||| | || || ||| |||| ||||| |||||||| ||| | ||||| Sbjct 4286 CCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCT 4345 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 || || ||| | ||| || | | | | || ||| ||||| |||| || Sbjct 4346 TTGTCTTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTA 4405 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 || | || |||||||| || || || || || | ||||||| Sbjct 4406 ATAGTCTTACCGGTCAAAGTCTTGACGAAGATCTACATTTTT 4447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379240170939210