Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq18203 127 2e-24 seq14202 118 9e-22 seq533 86.0 6e-12 >seq18203 Length=1365 Score = 127 bits (140), Expect = 2e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 |||||||||||| ||||| ||||| || |||||||| || ||||| | |||||||| || Sbjct 174 AAACATGCAAATCTTCGTTAAGACCCTCACAGGCAAGACCATCACTTTGGACGTTGAGCC 233 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| |||||| ||||| | || ||||||||||| | || ||||| Sbjct 234 CTCTGACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGA 293 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 || || | || || ||||||||||| || | |||||| | || || ||| || Sbjct 294 TCAACAAAGACTCATCTTCGCTGGCAAGCAACTCGAAGACGGAAGAACCTTGTCCGACTA 353 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || ||||| || ||||| |||| || ||||| || || |||| Sbjct 354 CAACATCCAGAAGGAATCAACCCTTCACTTGGTTCTCAGACTCAGAGGAGGTA 406 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || || || || |||||| |||| ||||| || || Sbjct 862 ATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACCATCACCCTCGATGTTGAGCCATCA 921 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || || | || |||||||||||| | || ||||| || Sbjct 922 GACACCATTGAAAACGTGAAGGCCAAGATCTAGGACAAGGAAGGTATCCCACCCGATCAA 981 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || |||||||| || || | |||||| | || || ||| || ||| Sbjct 982 CAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGACGGCAGAACCTTGTCCGACTACAAC 1041 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTAGA 31423 || ||||| || || ||||| || |||| || ||||| || || ||| || Sbjct 1042 ATCCAAAAGGAGTCAACTCTCCACTTGGTCCTCAGACTTAGAGGTGGTTGA 1092 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || || || || |||||| | ||||| || || || Sbjct 634 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCTTGGACGTCGAGCCTTCA 693 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | ||||| || ||| | ||||||||||| | || ||||| || Sbjct 694 GATACCATTGAGAATGTCAAGGCAAAGA-TCCAAGACAAGGAAGGTATCCCACCCGATCA 752 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || | || || ||||| || || || | ||||| | ||| | || || || Sbjct 753 ACAAAGACTCATCTTCGCCGGAAAGCAACTTGAAGATGGCAGAACTCTTTCAGACTACAA 812 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || |||||||| ||||||||| |||| || ||| |||| || |||| Sbjct 813 CATCCAGAAAGAATCTACTCTTCATTTGGTCCTCAGATTGAGAGGTGGTA 862 >seq14202 Length=1113 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||| | || ||||| ||||| |||| || || || ||||| | ||||| ||||| ||| Sbjct 654 ATGTAGATCTTCGTGAAGACCTTGACCGGTAAGACTATCACTTTGGACGTCGAACCATCC 713 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | || |||||||||||| | || ||||| || Sbjct 714 GACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCACCCGATCAA 773 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || ||||| || ||||| | |||||| | ||| ||||||| || ||| Sbjct 774 CAAAGACTCATCTTCGCCGGTAAACAACTTGAAGACGGCAGAACTTTGAGCGACTACAAC 833 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || ||||| || || ||||| || |||| || ||||| || || ||| Sbjct 834 ATCCAAAAGGAGTCTACTCTCCACTTGGTCCTCAGACTTAGAGGTGGT 881 Score = 107 bits (118), Expect = 2e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||||||| |||||||||| |||||||| || ||||| || ||||| | || ||||| | Sbjct 193 CAAACATGTAAATTTTCGTTAAGACTCTCACTGGCAAGACCATCACTCTTGATGTTGAGC 252 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | || || | | |||| ||||| | || ||||| || || | || |||| Sbjct 253 CATCAGATACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAAGAGGGAATCCCACCCG 312 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 | || ||| | || || |||||||| || |||||||||||| | || | ||| | Sbjct 313 ATCAACAGAGACTCATTTTCGCTGGAAAGCAGTTGGAAGACGGCAGAACCCTCTCCGACT 372 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | ||||| || || || || || ||||| |||| | ||||| || || |||| Sbjct 373 ACAACATCCAGAAGGAGTCAACCCTTCACTTGGTCTTGAGACTCAGAGGAGGTA 426 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || || || || |||||| | ||||| || || || Sbjct 426 ATGCAAATCTTCGTTAAGACCCTTACCGGAAAGACCATCACCCTTGACGTCGAGCCATCA 485 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| || || || ||| | || || ||||| | || ||||| || Sbjct 486 GACACCATTGAAAACGTTAAGGCAAAGA-TCCAAGATAAAGAAGGTATCCCACCCGATCA 544 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGA---CTATGAGCGATTA 31368 || | || || ||||| ||||| || | ||||| | | || || | || | || Sbjct 545 ACAAAGACTTATCTTCGCCGGCAAGCAACTTGAAGA-TGGAAGAACCCTTTCAG--ACTA 601 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || |||||||||||||| || ||||| |||| |||||| |||| || |||| Sbjct 602 CAATATTCAAAAAGAATCTACCCTTCACTTGGTTCTTAGATTGAGAGGAGGTA 654 >seq533 Length=4588 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||| | || ||||| |||||| |||| || || || || || | || || || || Sbjct 4447 AAAAATGTAGATCTTCGTCAAGACTTTGACCGGTAAGACTATTACTCTTGATGTAGAGCC 4388 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || || | |||||| || || | || ||||| ||||| | || || || Sbjct 4387 TTCTGATACCATCGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGTATTCCCCCTGA 4328 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 || ||| | || || || ||||| || ||||||||||| | || || ||||| Sbjct 4327 TCAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGCAGAACCTTGTCTGATTA 4268 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| ||||||||||| ||||| || |||| | ||||| || || ||| Sbjct 4267 CAACATCCAAAAAGAATCAACTCTCCACTTGGTCTTGAGACTTAGAGGTGGT 4216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445641262227360