Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq4291 140 6e-28 >seq4291 Length=4287 Score = 140 bits (154), Expect = 6e-28 Identities = 320/475 (67%), Gaps = 10/475 (2%) Strand=Plus/Plus Query 35183 TTTGGACCCCAAATGAGGTTCTCTCTTCGAGACGACACTATTCCAGTTCTCACTACCAAG 35242 |||||| |||||||| | |||| || || | | | ||| ||||||||||||| Sbjct 916 TTTGGATATCAAATGAGATATGATCTT---GAAGAAAGTTTCCCAATTCTCACTACCAAA 972 Query 35243 AAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGAC 35302 | |||||||||||||||| | || ||||| ||||| | | |||| ||||| | Sbjct 973 GATGTTTTCTGGAGAGGAGTAGCTGAGGAACTTGTTTGGTTTGTTAAGGGCGATACAAAT 1032 Query 35303 GCCAAAGAATTGGCCAAGAAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTT 35362 ||||| | || ||| | || ||||| || ||| ||| ||||| || | | || Sbjct 1033 GCCAAGAACTTAGCCGACAAAAAGATCAGAATTTGGGACGGTAATGCCTCAAGATAGTTC 1092 Query 35363 TTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTC 35422 | ||| || || || | ||||||| |||| | ||| | || || || || || ||| Sbjct 1093 CTTGACTCTATCGGCTTGAAAGATAGAGAAGAGTGGGATCTCGGGCCAGTCTATGGGTTC 1152 Query 35423 CAATGGCGTCATTTTGGTGCTGAATATGATAC-CTGTTCTTCCGATTATACTGGAAAGGG 35481 ||||| | || ||||| |||| ||||| || || | |||||| || ||||| || Sbjct 1153 TAATGGAGACACTTTGGAGCTGCTTATGAAACAATGCAC-GACGATTACACAGGAAAAGG 1211 Query 35482 TATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAA-AATCCAGATGATAGAAGGA 35540 |||| ||||||| | | | || ||| |||| |||||| ||||| | Sbjct 1212 ATTTGACTAATTGGCTGACGTCATTAATCAGTTGA-AGAACAATCCAACCAGCAGAAGAA 1270 Query 35541 TGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACA 35600 | | |||| || ||||| || |||||| | |||||||||||||| ||||||| Sbjct 1271 TTGTGATGAGTGCTTGGAACGCTGCTGATCTTAAAAACATGGCTCTTCCTCCCTGCCACA 1330 Query 35601 TGACTGCTCAATTTTATGT---GGCTAATGGAGAATTGTCGTGCCAGTTGTATCA 35652 | ||| |||||||||| ||| ||||| | | || ||||| ||||||| Sbjct 1331 TTTTAGCTTAATTTTATGTTTCTGCTGATGGAAAGCTTTCCTGCCAAATGTATCA 1385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989299254007390