Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq14466 219 5e-52 seq1053 205 1e-47 seq22165 161 1e-34 >seq14466 Length=3412 Score = 219 bits (242), Expect = 5e-52 Identities = 578/876 (66%), Gaps = 16/876 (2%) Strand=Plus/Minus Query 62994 ATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTT 63053 || |||||| ||| | ||| || ||||| ||||| | || | ||| || ||||| Sbjct 1941 ATAATCTCACAGCACAAATTGGAACTTTTGATGGTTCCGAGGTTCTTTTGGTTGCTCTTG 1882 Query 63054 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA 63113 |||| ||||||||| | ||| ||||||| |||||||| || || ||||| ||| Sbjct 1881 CTGTTGGCGTGATCCTTATACAACATGTATGGAGTTCCAGTTTCGATTTGTGATTCAATA 1822 Query 63114 ATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATC--TCCTTTCTCTTTCGT 63171 || |||| ||| | | |||| || ||| | ||| || | | | || | || | Sbjct 1821 ATGGCTTCCCAAAGTTTTTGAGCTTTCATTGTC--TTTCTACCAATTCCTTATTGCTCAT 1764 Query 63172 ATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATT--- 63228 | ||| |||| | |||||| || | || ||| ||| || ||| | || Sbjct 1763 ACTTAGTGTACAGTGCTTCGAATTCTTAACCATGAAC---GTCGAAG--AGGCCCTTGGC 1709 Query 63229 --CATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATC 63286 | | || || | | | ||| ||||||||| | | |||| ||||| || | || Sbjct 1708 TTCGTTGGGGCAGAAAAGTGTCCAGTCTCCGTCAGCTTGGACTCTCTTCATGAATAAGTC 1649 Query 63287 AGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTT 63346 |||||||| ||||| | || | ||||||| ||| |||||||| || || |||||| Sbjct 1648 TGGAATCCAGAGAGCGAAGAACAAGTCTCTTGCTCTTTGTTCCTCTTTACCGTGATTCTT 1589 Query 63347 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 63406 | | || | ||||| | | | ||| | ||||| |||||||||||||| || | Sbjct 1588 TCTTAGTTGAAGGAAATCGAAGACATCTGCGTGCCATGGTTCCAAGTATATAGCGAATGA 1529 Query 63407 TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 63466 || | ||| ||||| || || | |||||||| || | ||| ||||||| | Sbjct 1528 ACCCTTTCTCTTGCCACCTCCTTGGTCGACATATCTAGCAGTCTCATTGAAAACTCTGAG 1469 Query 63467 CATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACG 63526 |||||| | | || || ||||||||| || ||| || | ||| | || | Sbjct 1468 CATTGGCACGAGGCCATTACTGTGACCATTGGTGCCCTTGATGTAACTGCCAGTAGCTCT 1409 Query 63527 AATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 63586 || || || | ||||| | || || || ||| || || | |||| || | | Sbjct 1408 GATGTTGTGAACAGCCAGACCCACACCACCAGCTGATTTTGAAATCAGTGCG-ATGTTCT 1350 Query 63587 TAACG-TGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAG 63645 | | | | |||||||| || | || || || |||| |||| || || || || | Sbjct 1349 TGAGGGTATCATAGATACCGTTGATTGAGTCGTCCTTCATCATAAGGAGGAAGCAACTGG 1290 Query 63646 ACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 63705 |||||| | | |||||| ||||| || || ||||||| ||| || ||||||||| Sbjct 1289 ACATTTATGGCTTGGGAGTTCCAGCATTGAACAAAGTAGGAGTAGCATGAGTAAACCATC 1230 Query 63706 TTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTA 63765 | ||| | || ||||| || ||||| ||||| || |||||| | || || |||| Sbjct 1229 TGTCACTCATGAGGTTGTAAGTTTCAATGGCTGAATCGATATCCTTCTTGTGGATACCTA 1170 Query 63766 CTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACA 63825 | | || | ||| ||||||||||| ||||| ||||| || || || | || || | Sbjct 1169 CAGACACTCTCATCAACATGTGCTGTGGTCTCTCAACGATCTTAGAATTGACCTTTAATA 1110 Query 63826 AGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63861 |||||||| | ||||| || ||||| || ||||||| Sbjct 1109 AGTAGGATCTCTCCAAGGTCTTAAATCCGAAATAGT 1074 >seq1053 Length=3228 Score = 205 bits (226), Expect = 1e-47 Identities = 737/1124 (66%), Gaps = 44/1124 (4%) Strand=Plus/Minus Query 62763 GCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTC- 62821 || || || ||||||| |||||||| || || ||||| ||||| ||| || ||||| Sbjct 1936 GCATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGTGTCTAAGATTTGA-ATTTCT 1878 Query 62822 AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTAC 62881 |||||| |||| |||||| ||||| |||||||||||||||| ||||| | |||| Sbjct 1877 AGCTTCAGGAACAGGATAGTAATTGTTATCTATAATTTTATTTAGATTCTTAGTAATTCT 1818 Query 62882 TTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCC------CATCTATTACAAACAT 62935 ||| ||| | | | || | ||||| || | | || || || | Sbjct 1817 CTTGGTCACGTAATGTAACTTCTCATAATCATATTCTTAGGTTTCCTTTAACACGAATCT 1758 Query 62936 GTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTAT 62995 || || |||| ||| || || ||||| || || || |||| | | | | ||| | Sbjct 1757 ATTTAAAGCAATAGAAGCTAGGTTACAGACAGCCACTTCATCGGGACTGGTAAATTCGAC 1698 Query 62996 TATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTT 63055 |||||||||||||| ||| || ||| || || || | ||||| | ||| ||| | Sbjct 1697 GATCTCAGTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTAGATTTTCT 1638 Query 63056 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 63115 || || ||||| || || || || | ||||||||||| || | ||||| ||||| || Sbjct 1637 ATTGCAAGCATCTTTGTAGAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGAT 1578 Query 63116 CGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT---TCGTA 63172 ||||| || |||||| | || |||| | || | | || || Sbjct 1577 TTAACCCCAGAGCCATCTAGCCTTAAC---AGTTTTGCGACCTCTACCAGTGGTCTCATA 1521 Query 63173 -TAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCAT 63231 | || | || | | || ||||| || ||||| | | | || || ||||||| Sbjct 1520 CTCGA-TGTAAAGTTTCTCAAACTCCTCACCCCATGTAGTAGTAAGTCCTGGGCATTCAT 1462 Query 63232 CCGGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGA 63290 |||||||||| | ||| ||| | | | ||||| ||| | |||| || ||||| ||| Sbjct 1461 TTGGACACATCAGAGTCCAATCTTCATT-TGCTTCAACTCTTCTCATGAAAAGATCTGGA 1403 Query 63291 ATCCAAAGAGC-TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 63349 |||||||||| || ||| || ||||| | ||||| || || || || ||||||| | Sbjct 1402 GTCCAAAGAGCGTAGAAA-AGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTCT 1344 Query 63350 AAGATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTC 63408 ||| | ||||| | | || ||||||| ||||| ||||| | || | || | | ||| Sbjct 1343 AAGTTAAAGGAA-GTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCTC 1285 Query 63409 CAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 63468 | | ||| || || | ||| | |||||| ||||||| ||| | || |||||| Sbjct 1284 CCTTTCTTTTTCCACCACCTTAATCGACGTATCTTGCGGTGTCATTGAAGACCTTCAACA 1225 Query 63469 TTGGAATAATACCGTTTG-ATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGA 63527 ||||||| | || |||| |||| || || ||||| ||| ||| || || | | Sbjct 1224 TTGGAATCAATCCATTTGAATAT-CCGTTTGTACCTCTGATGTAGGAGTCAGCAGCTCTA 1166 Query 63528 ATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 63587 | || | ||| | || || || || || || ||||| | || | |||| Sbjct 1165 ACATCGGACACTGACACTCCGATACCACCAGCAGCCTTTGAGATAATAGCAATTTATTTT 1106 Query 63588 AACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTA-AG-TAGAAAACAGCTAG 63645 || || ||| |||| || || ||| || || | ||| || ||| || ||| || Sbjct 1105 AAAGTTTCAAAGATACCATCAATGGAGTCTTC-----TTTTACAGTTAGCAAGAAGCAAG 1051 Query 63646 A---CA--TTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63700 | || | |||| | || ||||| | ||||| | ||||||| || || ||||| Sbjct 1050 AACTCATCTATGGTTTTG-GT-GTTCCAGAGTTAAACAGAGTAGGAGTGGCATGAGTAAA 993 Query 63701 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63760 ||| || | | | || ||| ||||| | ||||| || | || || |||||| Sbjct 992 CCACAGTTGACTCATCAAATCGTAAGTCTCGAACGCTGACTCAAGGTCTTCTTTATGAAT 933 Query 63761 TCC--TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATT 63818 || |||| || | ||| | |||||| || ||||| |||| |||| |||| || Sbjct 932 ACCAATACT--TACTCTCATAAGCATGTGTTGTGGTCTCTCAAGGATTTGGTTG-CCATC 876 Query 63819 TTCAACAA-GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63861 || || || ||| | | ||||||| ||| | ||||||||||||| Sbjct 875 TTTAAGAAGGTAAGCTCTTTCCAATGTTCTGAAACCAAAATAGT 832 >seq22165 Length=1746 Score = 161 bits (178), Expect = 1e-34 Identities = 389/581 (67%), Gaps = 6/581 (1%) Strand=Plus/Plus Query 33597 TGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCA 33656 |||| ||| |||||||| ||| | || || || || ||||| || ||||| |||||| Sbjct 605 TGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGACCTGGCATGAGGCCA 664 Query 33657 CGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCA 33716 ||||| |||||||| || || || ||| ||||| || |||||||| || || | ||| Sbjct 665 CGCTTCTTAAGCCAGAAGATTGAGCAGAAGGATCCTGAGAAGAAGATGCCCTCGATGGCA 724 Query 33717 GCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAA 33776 || || ||||| |||||||| | | | ||||| ||| |||||||| ||||| Sbjct 725 GCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCGCTCTCACCAATCCACTTAATGGCCCAT 784 Query 33777 TCGGCCTTCTTTTTTACACAAGGCATCGTTTCT-ATGGCATTAAAGAGATAGtttttttC 33835 || |||||||| ||||| || || ||| | ||||| || ||||| | | || || Sbjct 785 TCAGCCTTCTTAGTTACAACTGGGAT-GTTAGTGATGGCTTTGAAGAGGAACTCCTTCTC 843 Query 33836 ATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTC 33895 | || | | || ||||| | | || | || || |||||||| || Sbjct 844 GTGTGGGTCACTGATGAGGGTGTCGATGAGTACTGAGTAAGTCTCTGAGTGAATGTTCTC 903 Query 33896 AATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAA 33955 || ||| || || || |||||||| | || || | || || | ||| ||||| || Sbjct 904 CATCATCATTTGGAAGCCATAGAAACAGCGTGCTTCTGGAACTTGGATTTCAGTACAGAA 963 Query 33956 TCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATG 34015 || | || | || || || || ||||| || ||| || || || || | || || Sbjct 964 TCTCTGGGCGAGGTTCTCGTTGACGATTCCGTCTGAGGCAGCGAAGAAAGCAAGGACGTG 1023 Query 34016 TTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATCATTGATATCTTTAGATA 34074 || ||||| | | | |||| || || ||| | | |||||| || | ||| | | | Sbjct 1024 CTTGATAAAGTGTCTCTCGT-TGTCATTGAGTCTCTCCCAATCTTTAACATCAGTGGCGA 1082 Query 34075 TATCCACTTCTTCCACTGTCCAAAATGATGCC-TCTGCCTTTTTATACATATTCCAGATG 34133 || | ||| || ||||| || | ||| |||| | || ||||| ||||||||| Sbjct 1083 GGTCGATTTCCTCAGAGGTCCAGAAAGCAGCCATCTG-GTCCTTGTACATCTTCCAGATG 1141 Query 34134 TCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174 || | || | |||||| | ||||||||||| ||||| || Sbjct 1142 TCGTTGTACTTGATTGGAAGGATAACAAATCTGTTTGGGTT 1182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629640794454240