Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1053 246 3e-60 >seq1053 Length=3228 Score = 246 bits (272), Expect = 3e-60 Identities = 989/1529 (65%), Gaps = 55/1529 (4%) Strand=Plus/Minus Query 37144 AAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCA 37203 || || |||| ||||||||||||||||||| |||| |||||||||||| | || ||| Sbjct 2308 AACTCACCAGCCAATACTCTTCTTGTATATACATTGGAAGTATATGGTTCGAAGGTCTCG 2249 Query 37204 TTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTT 37263 || || | | || | |||||| || ||||| ||||| || || | ||||| |||| Sbjct 2248 TTGTTTCCAAGGATCTAAGATGTCGAGGCAGTTGGCATAGGAGCGAGGAGAAGTGAATTT 2189 Query 37264 CTCAATCCATGTGTATTAATTC---TCTTTTTTAGTTCATTCCAA-TCCCATAAATCTGT 37319 || ||| ||||||| | |||||| | | ||||| | || || ||| | Sbjct 2188 CTAGCTCC----GTATTAAATGACGTCTTTTCTCAATTATTCCCAGTCGTATCTATCAGA 2133 Query 37320 T---GGGTTCTTTAACCACATATCATATTGTAGAATA--CCTTTACTCGCTGGAGAATCG 37374 || ||||| ||| | |||| ||| |||||| |||||| ||| ||| | Sbjct 2132 GCAAGGCTTCTTATTCCATAAATCAAATT--AGAATAGACCTTTAGAGAGTGGGGAACCT 2075 Query 37375 TTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCA 37434 | | || |||||||| || | | || ||| | || || ||| | |||||| Sbjct 2074 GGAAAAGTTTCATAAGGACCCTCGACCTTGGCTTGCTCCATTGAAGCTTCCATAGCGGCA 2015 Query 37435 TAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCA 37494 | ||| || || |||||||| || || || | || | || ||||||| Sbjct 2014 TGATAGATAGTCTCGAAAATGAGTTCGTTCAACCTGAGAGCCTTTTGATCCTCGAATGGG 1955 Query 37495 TAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGT 37554 ||| | | || |||| || || || | ||||| || || || ||||| ||| Sbjct 1954 ATCTTCAACATTTAAAGGGCATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGTGT 1895 Query 37555 TTCTTATTAGA---TCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTA 37611 | ||| || ||||| ||| || ||||| |||||| ||||||| |||||| Sbjct 1894 CTAAGATTTGAATTTCTAGC---TTCAGGAACAGGATAGTAATTGTTATCTATAATTTTA 1838 Query 37612 TTTAGATTTTTAACTAGTATTTTCGTAAT-TATTCTCAACTTGTCGAA--CATAAA--TA 37666 |||||||| ||| | | | || || | || | | ||||| || | |||| || Sbjct 1837 TTTAGATTCTTAGTAATTCTCTTGGTCACGTAATGT-AACTTCTCATAATCATATTCTTA 1779 Query 37667 CGTTATTATTAACA--AATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTC 37724 ||| |||||| ||| || | || | |||||| |||| ||||| ||||| ||||| Sbjct 1778 GGTTTCCTTTAACACGAATCTATTTAAAGCAATAGAAGCTAGGTTACAGACAGCCACTTC 1719 Query 37725 ATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCT---AATTGTTCC 37781 ||| | |||||| | ||||| || || || ||| || || |||||| || Sbjct 1718 ATCGGGACTGGTAAATTCGACGATCTCAGTGCAAAGGTTA---GAACTCTTAATTGTGCC 1662 Query 37782 CAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCC 37841 | ||| | || |||||| |||| |||| |||||| || || ||||| || || || Sbjct 1661 AAGATTTTACTAGTTAGATTTTCTATTGCAAGCATCTTTGTAGAGCATATAAGGAGTACC 1602 Query 37842 TTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTT 37901 || |||||| ||| || || | ||| | | ||| || ||||| | ||| Sbjct 1601 AGTCTCGTTTTGAGACTCTATGATTTAACCCCAGAGCCATCTAGCCTTAACAGT---TTT 1545 Query 37902 A--AtttttttCTTTGTT-TCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATAC 37958 | | | | || | || || || || || | ||| | ||| || | |||||| Sbjct 1544 GCGACCTCTACCAGTGGTCTCATACTCGATGTAAAGTTTCTCAAACTCCTCACCCCATGT 1485 Query 37959 A-TCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTA 38017 | | | | | |||||| ||||| ||||||||| |||| ||| ||||||| | ||| | Sbjct 1484 AGTAGTA-AGTCCTGGGCATTCATTTGGACACATCAGAGTCCAATCTTCATTTGCTTCAA 1426 Query 38018 CGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAA-TCTTTGGTTCTATAT 38076 | | | ||| || | ||| || ||| | || ||| | || ||| | | ||||| Sbjct 1425 CTCTTCTCATGAAAAGATCTGGAGTCCAAAGAGC-GTAGAAAAGGTCTCTAGCTCTATTC 1367 Query 38077 TCTTCGTTCCCTACATTCTTTCTTAAGCTTA-GAAAATCGAATATATCAGCGTGCCATGG 38135 ||||| || || ||||||||| ||| | | | || ||| | ||||||||||||||||| Sbjct 1366 TCTTCCTTACCGTGATTCTTTCT-AAGTTAAAGGAAGTCGTAGATATCAGCGTGCCATGG 1308 Query 38136 TTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAAC 38195 ||| | ||| | | | ||||| |||||| |||| || | || | ||||| | Sbjct 1307 TTCAACATAGACAGCGAAAGCTCCCTTTCTTTTTCCACCACCTTAATCGACGTATCTTGC 1248 Query 38196 TGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATAC--CG 38253 |||| ||| | | | ||||| || | | ||||| || | |||||| ||| | Sbjct 1247 GGTGTCATTGAAGACCTTCAACATTGGAATCAATCCATTTGAATATCCGTTTGTACCTCT 1188 Query 38254 GATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGT 38313 ||| || ||| | ||||| | || | |||| ||| || ||||| ||| Sbjct 1187 GATGTAGGAGT--CAGCAGCTCTAACATCGGACACTGACACTCCGATACCACCAGCAGCC 1130 Query 38314 TTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTT 38373 ||||| || | ||| || |||||| || ||||| ||||| || || ||| || ||| Sbjct 1129 TTTGAGATAATAGCAATTTATTTTAAAGTTTCAAAGATACCATCAATGGAGTCTTCTTTT 1070 Query 38374 ATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTA 38433 | | ||| | || ||| | ||| | || ||| ||||| | |||||| | ||| Sbjct 1069 ACAGTTAGCAAGAAGCAAGAACTCATCTATGGTTTTGGTGTTCCAGAGTTAAACAGAGTA 1010 Query 38434 GGAGATGCATGTATGAACCATTTTTCCGACAAAT--AATTATATGTTTCTATTACATCAT 38491 |||| ||||| | ||||| || ||| || ||| || || || | | | Sbjct 1009 GGAGTGGCATGAGTAAACCACAGTT--GACTCATCAAATCGTAAGTCTCGAACGCTGACT 952 Query 38492 CTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTA 38551 | | || | |||||||| | | ||| ||||| ||||| ||||||||||| || | Sbjct 951 CAAGGTCTTCTTTATGAATACCAATACTTACTCTCATAAGCATGTGTTGTGGTCTCTCAA 892 Query 38552 TTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAAC 38611 |||| || | |||||| || || | | |||| |||||| | | |||||||| Sbjct 891 GGATTTGGTTGCCATCTTTAAGAAGGTAAGCTCTTTCCAATGTTCTGAAACCAAAATAGT 832 Query 38612 TATATGAATAATCTCTATCGTATGCTATT 38640 ||| || |||||||| || ||||| Sbjct 831 CATAGTTGTAGTCTCTATCATAGACTATT 803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468393273375520