Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq14466 248 1e-60 seq1053 197 2e-45 seq22165 134 2e-26 >seq14466 Length=3412 Score = 248 bits (274), Expect = 1e-60 Identities = 589/880 (67%), Gaps = 24/880 (3%) Strand=Plus/Minus Query 65787 ATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 65846 || |||||| ||| | ||| || ||||||||||| | || | ||| || ||||| Sbjct 1941 ATAATCTCACAGCACAAATTGGAACTTTTGATGGTTCCGAGGTTCTTTTGGTTGCTCTTG 1882 Query 65847 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA 65906 |||| ||||||||| | ||| ||||||| |||||||| || || ||||| ||| Sbjct 1881 CTGTTGGCGTGATCCTTATACAACATGTATGGAGTTCCAGTTTCGATTTGTGATTCAATA 1822 Query 65907 ATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTAT 65966 || |||| ||| | | |||| || ||| | ||| || | || | || | || Sbjct 1821 ATGGCTTCCCAAAGTTTTTGAGCTTTCATTGTC--TTTCTACCAATTCCTTATTGCTCAT 1764 Query 65967 AGT--GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT----CCAGGACAT 66020 | | || |||| | |||||| || | || ||| ||| || || | | | Sbjct 1763 ACTTAGTGTACAGTGCTTCGAATTCTTAACCATGAAC---GTCGAAGAGGCCCTTGGC-T 1708 Query 66021 TCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCA 66080 || | || || | | | ||| ||||||||| | | |||| ||||| || | || Sbjct 1707 TCGTTGGGGCAGAAAAGTGTCCAGTCTCCGTCAGCTTGGACTCTCTTCATGAATAAGTCT 1648 Query 66081 GGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT 66140 |||||||| ||||| | || || ||||| | ||| |||||||| || || ||||||| Sbjct 1647 GGAATCCAGAGAGCGAAGAACAAGTCTCTTGCTCTTTGTTCCTCTTTACCGTGATTCTTT 1588 Query 66141 TTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACT 66200 | || | ||||| | | | ||| ||||| |||||||||||||| || | Sbjct 1587 CTTAGTTGAAGGAAATCGAAGACATCTGCGTGCCATGGTTCCAAGTATATAGCGAATGAA 1528 Query 66201 CCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 66260 || | ||| ||||| || || | |||||||| || | ||| ||||||| | | Sbjct 1527 CCCTTTCTCTTGCCACCTCCTTGGTCGACATATCTAGCAGTCTCATTGAAAACTCTGAGC 1468 Query 66261 ATTGGAATAATACCATTGGATGT-ACCATTGGTCCCGGAGATATAGCTTCCACTTGCACG 66319 ||||| | | ||||| ||| ||||||||| || ||| || || ||| | || | Sbjct 1467 ATTGGCACGAGGCCATTAC-TGTGACCATTGGTGCCCTTGATGTAACTGCCAGTAGCTCT 1409 Query 66320 AATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 66379 || || || | ||||| | || || || ||| || || | |||| || | | Sbjct 1408 GATGTTGTGAACAGCCAGACCCACACCACCAGCTGATTTTGAAATCAGTGCG-ATGTTCT 1350 Query 66380 TAACG-TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAG 66438 | | | |||||||||| || | || || ||| |||| |||| || || || || | Sbjct 1349 TGAGGGTATCATAGATACCGTTGATTGAGTCGTCCTTCATCATAAGGAGGAAGCAACTGG 1290 Query 66439 ACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 66494 |||||| | | || |||||| ||||| || || ||||||| ||| || |||||| Sbjct 1289 ACATTT----ATGGCTTGGGAGTTCCAGCATTGAACAAAGTAGGAGTAGCATGAGTAAAC 1234 Query 66495 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 66554 ||| | ||| | || ||||| || ||||| ||||| || |||||| | || || Sbjct 1233 CATCTGTCACTCATGAGGTTGTAAGTTTCAATGGCTGAATCGATATCCTTCTTGTGGATA 1174 Query 66555 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 66614 ||||| | || | ||| ||||||||||| ||||| ||||||||||| || | || Sbjct 1173 CCTACAGACACTCTCATCAACATGTGCTGTGGTCTCTCAACGATCTTAGAATTGACCTTT 1114 Query 66615 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 66654 || ||||||||| | ||||| || ||||| || ||||||| Sbjct 1113 AATAAGTAGGATCTCTCCAAGGTCTTAAATCCGAAATAGT 1074 >seq1053 Length=3228 Score = 197 bits (218), Expect = 2e-45 Identities = 732/1123 (65%), Gaps = 42/1123 (4%) Strand=Plus/Minus Query 65556 GCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTC- 65614 || ||||| ||||||| |||||||| || || ||||| ||||| ||| || ||||| Sbjct 1936 GCATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGTGTCTAAGATTTGA-ATTTCT 1878 Query 65615 AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTAC 65674 |||||| |||| |||||| ||||| |||||||||||||||| ||||| | |||| Sbjct 1877 AGCTTCAGGAACAGGATAGTAATTGTTATCTATAATTTTATTTAGATTCTTAGTAATTCT 1818 Query 65675 TTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCT------CATCTATTACAAACAT 65728 ||| ||| | | | || | ||||| || | | | || || || | Sbjct 1817 CTTGGTCACGTAATGTAACTTCTCATAATCATATTCTTAGGTTTCCTTTAACACGAATCT 1758 Query 65729 GTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 65788 || || |||| ||| || || ||||| || || || |||| | | | | ||| | Sbjct 1757 ATTTAAAGCAATAGAAGCTAGGTTACAGACAGCCACTTCATCGGGACTGGTAAATTCGAC 1698 Query 65789 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 65848 |||||||||||||| ||| || ||| || || || | ||||| | ||| ||| | Sbjct 1697 GATCTCAGTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTAGATTTTCT 1638 Query 65849 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 65908 || || ||||| || || || || | ||||||||||| || | ||||| ||||| || Sbjct 1637 ATTGCAAGCATCTTTGTAGAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGAT 1578 Query 65909 CGCTTTCCAGACGACTCGAGCCTTTA----TTATAGATTTGTATCTCTTTTCTCTTTCGT 65964 ||||| || |||||| | || || | || | | |||| | | | Sbjct 1577 TTAACCCCAGAGCCATCTAGCCTTAACAGTTTTGCGACCTCTACCAGTGGTCTCATAC-T 1519 Query 65965 ATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCAT 66024 | |||| | || || ||||| || ||||| | | | ||| || ||||||| Sbjct 1518 CGA-TGTAAAGTTTC--TCAAACTCCTCACCCCATGTAGTAGTAAGTCCTGGGCATTCAT 1462 Query 66025 CCGGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGA 66083 |||||||||| | ||| ||| | | | ||||| ||| | |||| || ||||| ||| Sbjct 1461 TTGGACACATCAGAGTCCAATCTTCATT-TGCTTCAACTCTTCTCATGAAAAGATCTGGA 1403 Query 66084 ATCCAAAGAGC-TATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 66142 |||||||||| || ||| | ||||| | ||||| || || || || ||||||| | Sbjct 1402 GTCCAAAGAGCGTAGAAA-AGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTCT 1344 Query 66143 AAGATCGAGGAACGCCATA-ATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTC 66201 ||| | ||||| | | || |||||| ||||| ||||| | || | || | | ||| Sbjct 1343 AAGTTAAAGGAA-GTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCTC 1285 Query 66202 CAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 66261 | | ||| || || | ||| | |||||| ||||||| ||| | || |||||| Sbjct 1284 CCTTTCTTTTTCCACCACCTTAATCGACGTATCTTGCGGTGTCATTGAAGACCTTCAACA 1225 Query 66262 TTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAA 66321 ||||||| | ||||| || || || || || ||| ||| || || | || Sbjct 1224 TTGGAATCAATCCATTTGAATATCCGTTTGTACCTCTGATGTAGGAGTCAGCAGCTCTAA 1165 Query 66322 TATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 66381 || | ||| | || || || || || || ||||| | || | ||||| Sbjct 1164 CATCGGACACTGACACTCCGATACCACCAGCAGCCTTTGAGATAATAGCAATTTATTTTA 1105 Query 66382 ACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA-AG-TAGAAAACAGCTAGA 66439 | || ||| |||| || || || || || | ||| || ||| || ||| ||| Sbjct 1104 AAGTTTCAAAGATACCATCAATGGAGTCTTC-----TTTTACAGTTAGCAAGAAGCAAGA 1050 Query 66440 ---CA--TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 66494 || | |||| | ||||| | ||||| | ||||||| || || |||||| Sbjct 1049 ACTCATCTATGGTTTTG--GTGTTCCAGAGTTAAACAGAGTAGGAGTGGCATGAGTAAAC 992 Query 66495 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 66554 || || | | | || ||| ||||| | ||||| || | || || |||||| Sbjct 991 CACAGTTGACTCATCAAATCGTAAGTCTCGAACGCTGACTCAAGGTCTTCTTTATGAATA 932 Query 66555 CC--TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTT 66612 || |||| || | ||| | |||||| || ||||| |||| ||| | |||| || | Sbjct 931 CCAATACT--TACTCTCATAAGCATGTGTTGTGGTCTCTCAAGGATTTGGTTG-CCATCT 875 Query 66613 TCAACAA-GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 66654 | || || ||| | | ||||||| ||| | ||||||||||||| Sbjct 874 TTAAGAAGGTAAGCTCTTTCCAATGTTCTGAAACCAAAATAGT 832 >seq22165 Length=1746 Score = 134 bits (148), Expect = 2e-26 Identities = 375/570 (66%), Gaps = 4/570 (1%) Strand=Plus/Plus Query 36178 ACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTT 36237 ||| |||||||| ||| | || || || || ||||| || ||||| ||||||||||| Sbjct 610 ACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGACCTGGCATGAGGCCACGCTT 669 Query 36238 TTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAA 36296 |||||||| || || || ||| || ||||| || ||||| || || || | || || | Sbjct 670 CTTAAGCCAGAAGATTGA-GCAGAAGGATCCTGAGAAGAAGATGCCCTCGATGGCAGCGA 728 Query 36297 AGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGG 36356 | ||||| |||||||| | | | || || ||| |||||||| ||||| || | Sbjct 729 AAGCAATTAGTCTCTCAGCGAAGCTAGCGCTCTCACCAATCCACTTAATGGCCCATTCAG 788 Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTAC 36416 ||||||| ||||| || || | || || || ||||| | | || || | Sbjct 789 CCTTCTTAGTTACAACTGGGATGTTAGTGATGGCTTTGAAGAGGAACTCCTTCTCGTGTG 848 Query 36417 TATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGG 36476 || | | || || || | | || | || || |||||||| || || Sbjct 849 GGTCACTGATGAGGGTGTCGATGAGTACTGAGTAAGTCTCTGAGTGAATGTTCTCCATCA 908 Query 36477 CCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTT 36536 |||||| || || |||||||| | || || | || || | ||| ||||| |||| | Sbjct 909 TCATTTGGAAGCCATAGAAACAGCGTGCTTCTGGAACTTGGATTTCAGTACAGAATCTCT 968 Query 36537 CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 36596 || | || || || || |||||||| ||| || || || || | || || || | Sbjct 969 GGGCGAGGTTCTCGTTGACGATTCCGTCTGAGGCAGCGAAGAAAGCAAGGACGTGCTTGA 1028 Query 36597 TAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCA 36656 |||| | | | ||||| | ||| | | |||||| || | ||| | | | || | Sbjct 1029 TAAAGTGTCTCTCGTTGTCATTGAGTCTCTCCCAATCTTTAACATCAGTGGCGAGGTCGA 1088 Query 36657 CTTCTTCCACTGTCCAAAATGATGCC-TCTGCCTTTTTATACATATTCCAGATGTCATGA 36715 ||| || ||||| || | ||| |||| | || ||||| ||||||||||| | Sbjct 1089 TTTCCTCAGAGGTCCAGAAAGCAGCCATCTG-GTCCTTGTACATCTTCCAGATGTCGTTG 1147 Query 36716 TATTGAATTGGAAAAATAACAAATCTATTT 36745 || | ||||||| ||||||||||| ||| Sbjct 1148 TACTTGATTGGAAGGATAACAAATCTGTTT 1177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657988034440720