Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq14466 233 3e-56 seq1053 230 3e-55 seq22165 170 3e-37 >seq14466 Length=3412 Score = 233 bits (258), Expect = 3e-56 Identities = 566/849 (67%), Gaps = 16/849 (2%) Strand=Plus/Minus Query 79693 TTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 79752 || |||||||| | || | ||| || ||||| |||| ||||||||| | ||| Sbjct 1914 TTGATGGTTCCGAGGTTCTTTTGGTTGCTCTTGCTGTTGGCGTGATCCTTATACAACATG 1855 Query 79753 AACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTT 79812 | ||||| |||||||| || || ||||| ||||| |||| ||| | | |||| || Sbjct 1854 TATGGAGTTCCAGTTTCGATTTGTGATTCAATAATGGCTTCCCAAAGTTTTTGAGCTTTC 1795 Query 79813 ATTATAGACTTGTATCTCTTTTCTCTT--TCGTATTGTGTATATAATCGTTCGAACTCGT 79870 ||| | || || | || | || || || | || || | | |||||| || | Sbjct 1794 ATTGTCT--TTCTACCAATTCCTTATTGCTCATACTTAGTGTACAGTGCTTCGAATTCTT 1737 Query 79871 CTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCAT 79930 || ||| ||| | || ||||| || || | | | ||| ||||| | Sbjct 1736 AACCATGAACGTCGAAGAGGCCCTTGGCTTCGTTGGGGCAGAAAAGTGTCCAGTCTCCGT 1677 Query 79931 CATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGG 79990 || | | |||| ||||| || | || |||||||| ||||| | || | ||||| | Sbjct 1676 CAGCTTGGACTCTCTTCATGAATAAGTCTGGAATCCAGAGAGCGAAGAACAAGTCTCTTG 1617 Query 79991 TTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 80050 ||| || ||||| || || ||||||| | || | ||||| | | | ||| | | Sbjct 1616 CTCTTTGTTCCTCTTTACCGTGATTCTTTCTTAGTTGAAGGAAATCGAAGACATCTGCGT 1557 Query 80051 GCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGT 80110 |||| |||||||||||||| || | ||| || ||| ||||| || || | | Sbjct 1556 GCCATGGTTCCAAGTATATAGCGAATGAACCCTTTCTCTTGCCACCTCCTTGGTCGACAT 1497 Query 80111 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGT-ACCATTG 80169 ||||||| || | ||| ||||||| | |||||| | | ||||| ||| ||||||| Sbjct 1496 ATCTAGCAGTCTCATTGAAAACTCTGAGCATTGGCACGAGGCCATTAC-TGTGACCATTG 1438 Query 80170 GTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCT 80229 || || ||| || || ||| | || | || || || | ||||| | || || Sbjct 1437 GTGCCCTTGATGTAACTGCCAGTAGCTCTGATGTTGTGAACAGCCAGACCCACACCACCA 1378 Query 80230 GCCATTTTAGAGATTAATGCGCATCGTTTTAACG-TATCATAGATGCCCTCTATGCTATC 80288 || ||| || || | |||| || | || | | |||||||||| || | || || Sbjct 1377 GCTGATTTTGAAATCAGTGCG-ATGTTCTTGAGGGTATCATAGATACCGTTGATTGAGTC 1319 Query 80289 ATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT----AGTTCCCGCAT 80344 || |||| |||| || || || || ||||||| | | || |||||| |||| Sbjct 1318 GTCCTTCATCATAAGGAGGAAGCAACTGGACATTT----ATGGCTTGGGAGTTCCAGCAT 1263 Query 80345 TAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAA 80404 | || || ||||||| ||| || ||||||||| | ||| || || ||||| || |||| Sbjct 1262 TGAACAAAGTAGGAGTAGCATGAGTAAACCATCTGTCACTCATGAGGTTGTAAGTTTCAA 1203 Query 80405 TAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAG 80464 | ||||| || |||||| | || || ||||| | || | ||| ||||||||||| | Sbjct 1202 TGGCTGAATCGATATCCTTCTTGTGGATACCTACAGACACTCTCATCAACATGTGCTGTG 1143 Query 80465 GTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAAC 80524 |||| ||||||||||| ||| | || || ||||| ||| | ||||| || ||||| | Sbjct 1142 GTCTCTCAACGATCTTAGAATTGACCTTTAATAAGTAGGATCTCTCCAAGGTCTTAAATC 1083 Query 80525 CAAAATAGT 80533 | ||||||| Sbjct 1082 CGAAATAGT 1074 >seq1053 Length=3228 Score = 230 bits (254), Expect = 3e-55 Identities = 737/1122 (66%), Gaps = 40/1122 (4%) Strand=Plus/Minus Query 79435 GCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCA 79494 || ||||| ||||||| |||||||| || || ||||| ||||| ||| ||| || | Sbjct 1936 GCATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGTGTCTAAGATTTGAATTTCTA 1877 Query 79495 GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACT 79554 ||||| |||| |||||| ||||| |||||||||||||||| |||||| | | || | || Sbjct 1876 GCTTCAGGAACAGGATAGTAATTGTTATCTATAATTTTATTTAGATTCTT-AGTAATTCT 1818 Query 79555 -TTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTC------CATCTATTACAAACAT 79607 ||| ||| | | || || | ||||| || | | | || || || | Sbjct 1817 CTTGGTCACGTAATGTAACTTCTCATAATCATATTCTTAGGTTTCCTTTAACACGAATCT 1758 Query 79608 GTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 79667 || || || | ||| || || ||||| || || || |||| | | | | ||| | Sbjct 1757 ATTTAAAGCAATAGAAGCTAGGTTACAGACAGCCACTTCATCGGGACTGGTAAATTCGAC 1698 Query 79668 TATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTT 79727 || |||||||| |||||| || |||||| || || | ||||| | ||| ||| | Sbjct 1697 GATCTCAGTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTAGATTTTCT 1638 Query 79728 GTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAAT 79787 || || ||||| || || || || | ||||||||||| || | ||||| ||||| || Sbjct 1637 ATTGCAAGCATCTTTGTAGAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATGAT 1578 Query 79788 CGCTTTCCAGACGACTCGAGCCTTTA----TTATAGACTTGTATCTCTTTTCTCTTTCGT 79843 ||||| || |||||| | || ||| | || | | |||| | | Sbjct 1577 TTAACCCCAGAGCCATCTAGCCTTAACAGTTTTGCGACCTCTACCAGTGGTCTCATAC-- 1520 Query 79844 ATTG-TGTATATAATCGTTCGAACTCGTCTCCCCAAACA-TCGTCTAATCCAGGACATTC 79901 | | |||| | || || ||||| || ||||| | | || | ||| || ||||| Sbjct 1519 -TCGATGTAAAGTTTC--TCAAACTCCTCACCCCATGTAGTAGTA-AGTCCTGGGCATTC 1464 Query 79902 GTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGG 79961 | |||||||||| | ||| ||| ||| | | |||| | |||| || ||||| || Sbjct 1463 ATTTGGACACATCAGAGTCCAATCTTCATTTGCTTCAACTCTTCTCATGAAAAGATCTGG 1404 Query 79962 AATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTT 80020 | |||||||||| || ||| || ||||| | ||||| ||| || || || ||||||| Sbjct 1403 AGTCCAAAGAGCGTAGAAA-AGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTTC 1345 Query 80021 TAAGATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 80079 |||| | ||||| | | || ||||||| ||||| ||||| | || | || | | || Sbjct 1344 TAAGTTAAAGGAA-GTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGCT 1286 Query 80080 CCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 80139 ||| || ||| || || | ||| | |||||| ||||||| ||| | || ||||| Sbjct 1285 CCCTTTCTTTTTCCACCACCTTAATCGACGTATCTTGCGGTGTCATTGAAGACCTTCAAC 1226 Query 80140 ATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGA 80199 |||||||| | ||||| || || || || || ||| ||| || || | | Sbjct 1225 ATTGGAATCAATCCATTTGAATATCCGTTTGTACCTCTGATGTAGGAGTCAGCAGCTCTA 1166 Query 80200 ATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 80259 | || | ||| | || || || || || || ||||| | || | |||| Sbjct 1165 ACATCGGACACTGACACTCCGATACCACCAGCAGCCTTTGAGATAATAGCAATTTATTTT 1106 Query 80260 AACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTA-AG-TAGAAAACAGCTAG 80317 || || ||| |||| || || ||| || || | ||| || ||| || ||| || Sbjct 1105 AAAGTTTCAAAGATACCATCAATGGAGTCTTC-----TTTTACAGTTAGCAAGAAGCAAG 1051 Query 80318 A---CA--TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 80372 | || | |||| | ||||| | ||||| | ||||||| || || ||||| Sbjct 1050 AACTCATCTATGGTTTTG--GTGTTCCAGAGTTAAACAGAGTAGGAGTGGCATGAGTAAA 993 Query 80373 CCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAAT 80432 ||| || | || | || ||| ||||| | ||||| || | || || |||||| Sbjct 992 CCACAGTTGACTCATCAAATCGTAAGTCTCGAACGCTGACTCAAGGTCTTCTTTATGAAT 933 Query 80433 TCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTT 80492 || | || | ||| | |||||| || ||||| |||| ||| ||| | || || Sbjct 932 ACCAATACTTACTCTCATAAGCATGTGTTGTGGTCTCTCAAGGAT-TTGGTTGCCATCTT 874 Query 80493 CAACAA-GTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGT 80533 || || ||||| | ||||||| ||| | ||||||||||||| Sbjct 873 TAAGAAGGTAAGCTCTTTCCAATGTTCTGAAACCAAAATAGT 832 >seq22165 Length=1746 Score = 170 bits (188), Expect = 3e-37 Identities = 391/581 (67%), Gaps = 6/581 (1%) Strand=Plus/Plus Query 49975 TGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 50034 |||| ||| |||||||| ||| || || || || || ||||| || ||||| |||||| Sbjct 605 TGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGACCTGGCATGAGGCCA 664 Query 50035 CGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGATTCCTTCTACTGC 50093 ||||| |||||||| || || || ||| || || || || |||||||| || || | || Sbjct 665 CGCTTCTTAAGCCAGAAGATTGA-GCAGAAGGATCCTGAGAAGAAGATGCCCTCGATGGC 723 Query 50094 GGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCACTTTTGAGCCCA 50153 || || |||| |||||||| | | || ||||| ||| |||||||| ||||| Sbjct 724 AGCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCGCTCTCACCAATCCACTTAATGGCCCA 783 Query 50154 ATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT-ATGGCATTAAAGAGATAGttttttt 50212 || |||||||| ||||| || || ||| | ||||| || ||||| | | || | Sbjct 784 TTCAGCCTTCTTAGTTACAACTGGGAT-GTTAGTGATGGCTTTGAAGAGGAACTCCTTCT 842 Query 50213 CATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTT 50272 | | || | | || ||||| | | || | || || |||||||| | Sbjct 843 CGTGTGGGTCACTGATGAGGGTGTCGATGAGTACTGAGTAAGTCTCTGAGTGAATGTTCT 902 Query 50273 CAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAA 50332 | || ||| || || || |||||||| | || || | || || | ||| ||||| | Sbjct 903 CCATCATCATTTGGAAGCCATAGAAACAGCGTGCTTCTGGAACTTGGATTTCAGTACAGA 962 Query 50333 ATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACAT 50392 ||| | || | || || || || |||||||| ||| || || || || | || | Sbjct 963 ATCTCTGGGCGAGGTTCTCGTTGACGATTCCGTCTGAGGCAGCGAAGAAAGCAAGGACGT 1022 Query 50393 GTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 50452 | || ||||| ||| | |||||| | ||| | | |||||| || | ||| | | | Sbjct 1023 GCTTGATAAAGTGTCTCTCGTTGTCATTGAGTCTCTCCCAATCTTTAACATCAGTGGCGA 1082 Query 50453 TATCTACTTCTTCCACTGTCCAAAATGATGCC-TCTGCCTTTTTATACATATTCCAGATG 50511 || | ||| || ||||| || | ||| |||| | || ||||| ||||||||| Sbjct 1083 GGTCGATTTCCTCAGAGGTCCAGAAAGCAGCCATCTG-GTCCTTGTACATCTTCCAGATG 1141 Query 50512 TCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552 || | || | |||||| | ||||||||||| ||||| || Sbjct 1142 TCGTTGTACTTGATTGGAAGGATAACAAATCTGTTTGGGTT 1182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718067163991120