Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq14466 244 1e-59 seq1053 228 1e-54 seq22165 143 4e-29 >seq14466 Length=3412 Score = 244 bits (270), Expect = 1e-59 Identities = 613/924 (66%), Gaps = 22/924 (2%) Strand=Plus/Minus Query 71704 GATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAA 71763 || || || || ||||| ||||| |||| | || || | ||||| ||| ||| Sbjct 1986 GAAGCAAGGTTGCAAACAGCTACTTCATCTGGTGAGGTGTACTCGATAATCTCACAGCAC 1927 Query 71764 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 71823 | ||| || ||||||||||| | || | ||| || ||||| |||| |||| Sbjct 1926 AAATTGGAACTTTTGATGGTTCCGAGGTTCTTTTGGTTGCTCTTGCTGTTGGCGTGATCC 1867 Query 71824 TTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 71883 ||||| | || | ||||| |||||||| || || ||||| ||||| |||| ||| | Sbjct 1866 TTATACAACATGTATGGAGTTCCAGTTTCGATTTGTGATTCAATAATGGCTTCCCAAAGT 1807 Query 71884 ACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTT--TCGTATTGTGTATATAATC 71941 | |||| || ||| | || | || | || | || || || | || || | | Sbjct 1806 TTTTGAGCTTTCATTGTCTT--TCTACCAATTCCTTATTGCTCATACTTAGTGTACAGTG 1749 Query 71942 GTTCGAACTCGTCTCCCCAAGCATTGTCTAAT----CCAGGACATTCATTCGGACACATC 71997 |||||| || | || | | ||| || || | | ||| || || || | Sbjct 1748 CTTCGAATTCTTAACCATGAAC---GTCGAAGAGGCCCTTGGC-TTCGTTGGGGCAGAAA 1693 Query 71998 AATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 72057 | || ||| ||||| ||| | | |||| ||||| || | || |||||||| ||||| Sbjct 1692 AGTGTCCAGTCTCCGTCAGCTTGGACTCTCTTCATGAATAAGTCTGGAATCCAGAGAGCG 1633 Query 72058 ATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 72117 | || | ||||| | ||| || ||||| || || ||||||| | || | ||||| Sbjct 1632 AAGAACAAGTCTCTTGCTCTTTGTTCCTCTTTACCGTGATTCTTTCTTAGTTGAAGGAAA 1573 Query 72118 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTT 72177 | | | ||| | ||||| |||||||||||||| || | ||| | ||| Sbjct 1572 TCGAAGACATCTGCGTGCCATGGTTCCAAGTATATAGCGAATGAACCCTTTCTCTTGCCA 1513 Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 ||||| || || | |||||||| || | ||| ||||||| | |||||| | | ||| Sbjct 1512 CCTCCTTGGTCGACATATCTAGCAGTCTCATTGAAAACTCTGAGCATTGGCACGAGGCCA 1453 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 || ||||||||| || ||| || || ||| | || | || ||| || | Sbjct 1452 TTACTGTGACCATTGGTGCCCTTGATGTAACTGCCAGTAGCTCTGATGTTGTGAACAGCC 1393 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG-TATCATAGAT 72356 ||||| | || || || ||| || || | |||| || | || | | |||||||||| Sbjct 1392 AGACCCACACCACCAGCTGATTTTGAAATCAGTGCG-ATGTTCTTGAGGGTATCATAGAT 1334 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 72416 || | || || ||| |||| |||| || || || || ||||||| | | || Sbjct 1333 ACCGTTGATTGAGTCGTCCTTCATCATAAGGAGGAAGCAACTGGACATTT----ATGGCT 1278 Query 72417 ----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTA 72472 |||||| ||||| || || ||||||| ||| || ||||||||| | ||| || | Sbjct 1277 TGGGAGTTCCAGCATTGAACAAAGTAGGAGTAGCATGAGTAAACCATCTGTCACTCATGA 1218 Query 72473 GATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCA 72532 | ||||| || ||||| ||||| || |||||| | || || ||||| | || | || Sbjct 1217 GGTTGTAAGTTTCAATGGCTGAATCGATATCCTTCTTGTGGATACCTACAGACACTCTCA 1158 Query 72533 TTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTT 72592 | ||||| ||||| ||||| ||||||||||| ||| | || || ||||||||| | | Sbjct 1157 TCAACATGTGCTGTGGTCTCTCAACGATCTTAGAATTGACCTTTAATAAGTAGGATCTCT 1098 Query 72593 CCAAAGTTTTAAAACCAAAATAGT 72616 |||| || ||||| || ||||||| Sbjct 1097 CCAAGGTCTTAAATCCGAAATAGT 1074 >seq1053 Length=3228 Score = 228 bits (252), Expect = 1e-54 Identities = 738/1123 (66%), Gaps = 42/1123 (4%) Strand=Plus/Minus Query 71518 GCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCA 71577 || ||||| ||||||| || ||||| || || ||||||||||| ||| ||| || | Sbjct 1936 GCATCTGCAAATCCTTAGACACCAATTCCAATTGGTCTGTGTCTAAGATTTGAATTTCTA 1877 Query 71578 GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACT 71637 ||||| |||| |||||| ||||| |||||||||||||||| ||||| || | || | || Sbjct 1876 GCTTCAGGAACAGGATAGTAATTGTTATCTATAATTTTATTTAGATT-CTTAGTAATTCT 1818 Query 71638 -TTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTATTACA--AACACG--- 71691 ||| ||| | | || || | ||||| || || | | || | |||||| Sbjct 1817 CTTGGTCACGTAATGTAACTTCTCATAATCATAT-TCTTAGGT-TTCCTTTAACACGAAT 1760 Query 71692 ---TTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGT 71748 || || |||| ||| || || ||||| || || || |||| | | || | ||| Sbjct 1759 CTATTTAAAGCAATAGAAGCTAGGTTACAGACAGCCACTTCATCGGGACTGGTAAATTCG 1700 Query 71749 ATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 71808 | || ||||||||||| ||| || ||| || || || | ||||| | ||| ||| Sbjct 1699 ACGATCTCAGTGCAAAGGTTAGAACTCTTAATTGTGCCAAGATTTTACTAGTTAGATTTT 1640 Query 71809 TTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATA 71868 | || || ||||| || || || ||| | ||||||||||| || | ||||| ||||| Sbjct 1639 CTATTGCAAGCATCTTTGTAGAGCATATAAGGAGTACCAGTCTCGTTTTGAGACTCTATG 1580 Query 71869 ATCGCTTTCCAGACGACTCGAGCCTTTATTATATT----CTTGTATCTCTTTTCTCTTTC 71924 || ||||| || |||||| | | || | | || | | |||| | | Sbjct 1579 ATTTAACCCCAGAGCCATCTAGCCTTAACAGTTTTGCGACCTCTACCAGTGGTCTCATAC 1520 Query 71925 GTATTG-TGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATT 71983 | | |||| | || || ||||| || ||||| | | | | ||| || |||| Sbjct 1519 ---TCGATGTAAAGTTTC--TCAAACTCCTCACCCCATGTAGTAGTAAGTCCTGGGCATT 1465 Query 71984 CATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAG 72043 |||| |||||||||| | ||| ||| ||| | | |||| | |||| || ||||| | Sbjct 1464 CATTTGGACACATCAGAGTCCAATCTTCATTTGCTTCAACTCTTCTCATGAAAAGATCTG 1405 Query 72044 GAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTT 72102 || |||||||||| || ||| || ||||| | ||||| ||| || || || ||||||| Sbjct 1404 GAGTCCAAAGAGCGTAGAAA-AGGTCTCTAGCTCTATTCTCTTCCTTACCGTGATTCTTT 1346 Query 72103 TTAAGATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 72161 |||| | ||||| | | || ||||||| ||||| ||||| | || | || | | | Sbjct 1345 CTAAGTTAAAGGAA-GTCGTAGATATCAGCGTGCCATGGTTCAACATAGACAGCGAAAGC 1287 Query 72162 TCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 72221 |||| | ||| || || | ||| | |||||| ||||||| ||| | || |||| Sbjct 1286 TCCCTTTCTTTTTCCACCACCTTAATCGACGTATCTTGCGGTGTCATTGAAGACCTTCAA 1227 Query 72222 CATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACG 72281 ||||||||| | ||||| || || || || || ||| ||| || || | Sbjct 1226 CATTGGAATCAATCCATTTGAATATCCGTTTGTACCTCTGATGTAGGAGTCAGCAGCTCT 1167 Query 72282 AATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 72341 || || | | ||| | || || || || || || ||||| | || | ||| Sbjct 1166 AACATCGGACACTGACACTCCGATACCACCAGCAGCCTTTGAGATAATAGCAATTTATTT 1107 Query 72342 TAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA-AG-TAGAAAACAGCTA 72399 ||| || ||| |||| || || || || || | ||| || ||| || ||| | Sbjct 1106 TAAAGTTTCAAAGATACCATCAATGGAGTCTTC-----TTTTACAGTTAGCAAGAAGCAA 1052 Query 72400 GA---CA--TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 72454 || || | |||| | ||||| | ||||| | ||||||| || || |||| Sbjct 1051 GAACTCATCTATGGTTTTG--GTGTTCCAGAGTTAAACAGAGTAGGAGTGGCATGAGTAA 994 Query 72455 ACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTA 72514 |||| || | || | || ||| ||||| | ||||| || | || || ||| | Sbjct 993 ACCACAGTTGACTCATCAAATCGTAAGTCTCGAACGCTGACTCAAGGTCTTCTTTATGAA 934 Query 72515 TTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTT 72574 | || | || | ||| | ||| || || ||||| |||| ||| ||| | || | Sbjct 933 TACCAATACTTACTCTCATAAGCATGTGTTGTGGTCTCTCAAGGAT-TTGGTTGCCATCT 875 Query 72575 TCAACAA-GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 72616 | || || ||| | | ||||||| ||| | ||||||||||||| Sbjct 874 TTAAGAAGGTAAGCTCTTTCCAATGTTCTGAAACCAAAATAGT 832 >seq22165 Length=1746 Score = 143 bits (158), Expect = 4e-29 Identities = 385/581 (66%), Gaps = 6/581 (1%) Strand=Plus/Plus Query 42080 TGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 42139 |||| ||| || ||||| ||| | || || || || ||||| || ||||| |||||| Sbjct 605 TGCATACCTTCGTCTCTTGAAATGAGCTCATTTGAGAAGGTGAGACCTGGCATGAGGCCA 664 Query 42140 CGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAAGATTCCTTCTACTGC 42198 ||||| |||||||| || || || ||| || ||||| || |||||||| || || | || Sbjct 665 CGCTTCTTAAGCCAGAAGATTGA-GCAGAAGGATCCTGAGAAGAAGATGCCCTCGATGGC 723 Query 42199 CGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTTTGAGCCCA 42258 || || ||||| |||||||| | | | || || ||| |||||||| ||||| Sbjct 724 AGCGAAAGCAATTAGTCTCTCAGCGAAGCTAGCGCTCTCACCAATCCACTTAATGGCCCA 783 Query 42259 ATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT-ATGGCATTAAAGAGATAGttttttt 42317 || |||||||| ||||| || || ||| | ||||| || ||||| | | || | Sbjct 784 TTCAGCCTTCTTAGTTACAACTGGGAT-GTTAGTGATGGCTTTGAAGAGGAACTCCTTCT 842 Query 42318 CATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTT 42377 | | || | | || ||||| | | || | ||||| |||||||| | Sbjct 843 CGTGTGGGTCACTGATGAGGGTGTCGATGAGTACTGAGTAAGTCTCTGAGTGAATGTTCT 902 Query 42378 CAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAA 42437 | || ||| || || || |||||||| | || || | ||| || | ||| ||||| | Sbjct 903 CCATCATCATTTGGAAGCCATAGAAACAGCGTGCTTCTGGAACTTGGATTTCAGTACAGA 962 Query 42438 ATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACAT 42497 ||| | || | || ||||| || |||||||| ||| || || || || | || | Sbjct 963 ATCTCTGGGCGAGGTTCTCGTTGACGATTCCGTCTGAGGCAGCGAAGAAAGCAAGGACGT 1022 Query 42498 GTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATA 42557 | || ||||| | | | |||| | | | | | |||||| || | ||| | | | Sbjct 1023 GCTTGATAAAGTGTCTCTCGTTGTCATTGAGTCTCTCCCAATCTTTAACATCAGTGGCGA 1082 Query 42558 TATCTACTTCTTCTACCGTCCA-AAATGATGCTTCTGCCTTTTTATACATATTCCAGATA 42616 || | ||| || ||||| ||| | | |||| | || ||||| |||||||| Sbjct 1083 GGTCGATTTCCTCAGAGGTCCAGAAAGCAGCCATCTG-GTCCTTGTACATCTTCCAGATG 1141 Query 42617 TCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATT 42657 || | || | ||||| | ||||||||||| ||||| || Sbjct 1142 TCGTTGTACTTGATTGGAAGGATAACAAATCTGTTTGGGTT 1182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670950794448080