Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq14202 111 2e-19 seq18203 102 8e-17 seq533 91.5 1e-13 >seq14202 Length=1113 Score = 111 bits (122), Expect = 2e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 ||||| || ||||| |||||||| ||||||| || || |||||| ||||||||||| Sbjct 850 GTAGACTCCTTTTGGATGTTGTAGTCGCTCAAAGTTCTGCCGTCTTCAAGTTGTTTACCG 791 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| || | ||| |||||||| || || ||||| ||||| || || ||| Sbjct 790 GCGAAGATGAGTCTTTGTTGATCGGGTGGAATACCTTCCTTGTCCTGGATCTTGGCTTTG 731 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | ||||| || || | ||| | ||||| |||||||| || Sbjct 730 ACATTCTCGATGGTGTCGGATGGTTCGACGTCCAAAGTGATAGTCTTACCGGTCAAGGTC 671 Query 143168 TTTACGAATATTTGCATAGCT 143188 || ||||| || | |||| || Sbjct 670 TTCACGAAGATCTACATACCT 650 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| || | | ||| || |||| |||||||||||||| || ||||| || Sbjct 652 CCTCCTCTCAATCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGAATATTGTAGTCTGAA 593 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| ||||| || || || |||| || | ||| |||||||| || Sbjct 592 AGGGTTCTTCCATCTTCAAGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGATCGGGTGGG 533 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || || ||| || | | ||| | ||||| | || || || Sbjct 532 ATACCTTCTTTATCTTGGATCTTTGCCTTAACGTTTTCAATGGTGTCTGATGGCTCGACG 473 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||| || | ||||| ||||| | || || ||||| ||||||||| || Sbjct 472 TCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCATACCT 422 >seq18203 Length=1365 Score = 102 bits (112), Expect = 8e-17 Identities = 156/221 (71%), Gaps = 1/221 (0%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| || |||| || ||||| || || |||||||| ||| || || || |||||| Sbjct 387 AACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTTCTTCCGTCTTC 328 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 |||||| || ||||| |||| || | ||| |||||||| || || ||||| ||||| Sbjct 327 GAGTTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTG 268 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 || || || | | ||| | ||||| | ||| || || || | ||| | ||||| Sbjct 267 GATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGGCTCAACGTCCAAAGTGATGGTCTT 208 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATAGCTTATGTTT 143195 ||| || | || || ||||| |||||||| | |||| ||| Sbjct 207 GCCTGTGAGGGTCTTAACGAAGATTTGCAT-GTTTATTTTT 168 >seq533 Length=4588 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| || || || | || ||||||||||| ||||||||||| || || || ||| Sbjct 4231 CAAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTC 4290 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| | | || |||||| |||| || | || ||||| || || || ||||||||||| Sbjct 4291 TTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTC 4350 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 ||| || || | | ||| | || || | || ||||| |||| ||| | || Sbjct 4351 TTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGT 4410 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| |||||||| || || ||||| || | ||| Sbjct 4411 CTTACCGGTCAAAGTCTTGACGAAGATCTACAT 4443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506872068382560