Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq22165 123 4e-23 >seq22165 Length=1746 Score = 123 bits (136), Expect = 4e-23 Identities = 564/871 (65%), Gaps = 45/871 (5%) Strand=Plus/Minus Query 124999 TTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAG--GCCTCCTTT-T 125055 |||| |||| ||| | ||||| ||| | |||||||| || ||| | || |||| | Sbjct 1160 TTCCAATCAAGTACAACGACATCTGGAAGATGTACAA---GGACCAGATGGCTGCTTTCT 1104 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||| || || |||| || ||| || | | |||||||||| | | | || Sbjct 1103 GGACCTCTGAGGAAATCGACCTCGCCACTGATGTTAAAGATTGGGAGAGAC---TCAATG 1047 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | | ||| || | ||||| |||| | | || ||||| || | ||| || ||||||| Sbjct 1046 ACAACGAGAGACACTTTATCAAGCACGTCCTTGCTTTCTTCGCTGCCTCAGACGGAATCG 987 Query 125176 TCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGT 125232 ||||||| || || | | | |||||| | || | ||| ||||||| | | Sbjct 986 TCAACGAGAACCTCGCCCAGA-GATTCTGTACTGAAAT--CCAAGTTCCAGAAGCACGCT 930 Query 125233 GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 | || || || |||||||| ||||| |||||| | ||||| || | ||||| ||| | Sbjct 929 GTTTCTATGGCTTCCAAATGATGATGGAGAACATTCACTCAGAGACTTACTCAGTACTCA 870 Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGG 125352 | |||| ||| | || || || || | | ||||| || || ||| | Sbjct 869 TCGACACCCTCATCAGTGACCCACACGAGAAGGAGTTCCTCTTCAAAGCCATCACTAACA 810 Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGA---CAAGT 125409 | || | || ||| |||||| |||||| ||| |||||| | ||| || | || Sbjct 809 TCCCAGTTGTAACTAAGAAGGCTGAATGGGCCATTAAGTGGATTGGTGA-GAGCGCTAG- 752 Query 125410 CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC-GGGT 125468 ||||| | || ||||| | || ||||| ||| | |||||||||||||| || || | Sbjct 751 CTTCG----CTGAGAGACTAATTGCTTTCGCTGCCATCGAGGGCATCTTCTTCTCAGGAT 696 Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 || ||| | ||||| ||||| |||||||| || |||||||| || || || | Sbjct 695 CCTTCTGC-TCAATCTTCTGGCTTAAGAAGCGTGGCCTCATGCCAGGTCTCACCTTCTCA 637 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGC 125588 || ||| | || || ||||||| || | || ||||||||| || || | | Sbjct 636 AATGAGCTCATTTCAAGAGACGAAGGTATGCATACTGACTTTGCTTGCCTCCTCT---AC 580 Query 125589 AACTATCTGCGTCCCGAGTGCAGA---TCCAGCGATGAAAAGGTCATCAACATTGTAACC 125645 || | || | || | || | ||| || || || | | ||| | ||| Sbjct 579 AAGCACTTG------AACAACAAACTTTCTAACGA-GAGAA--TCTTGGAAATTATTACC 529 Query 125646 GATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACC-GGTCAGCATGATTGG 125704 ||||||| | || || | ||| || ||| || ||||| || | | ||| | ||||| Sbjct 528 AATGCCGTCGGAATCGAGCTAGAATTCGTAAGTGACTCCCTTCCAGTTGAGC-TTATTGG 470 Query 125705 CATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACG- 125763 |||||| ||||| ||||| || ||||||| ||| || ||||| | || || | || Sbjct 469 TATGAACAGCAAGTTAATGGGCCAGTACATCATGTTCGTTGCAGACAGACTTCTTTTCGC 410 Query 125764 AGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATAT 125823 ||| | || || | || | | | | || || || || | ||| || || | Sbjct 409 TCTTGGTGTACCTAAATA-CTATTAAGTCGAAAACCCATTCGAATGGATGGACATGATTT 351 Query 125824 CACTAGAGGGTAAGACCAACTTTTTCGAGAA 125854 ||||| || ||||||||||| |||||||| Sbjct 350 CACTAACAGGCAAGACCAACTTCTTCGAGAA 320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740851166156080