Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq18203 118 8e-22 seq533 107 1e-18 seq14202 104 2e-17 >seq18203 Length=1365 Score = 118 bits (130), Expect = 8e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||| | || |||||||| || || ||||| || |||||||| || Sbjct 860 CCACCTCTCAATCTGAGGACCAAATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCTGAA 801 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| | ||||| | ||| || || ||| | || | | |||||| ||| ||| Sbjct 800 AGAGTTCTGCCATCTTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGTTGATCGGGTGGG 741 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| ||||| || ||||| ||| ||| | || |||||||| | || || Sbjct 740 ATACCTTCCTTGTCTTGGATCTTTGC-CTTGACATTCTCAATGGTATCTGAAGGCTCGAC 682 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| ||||| || || || || || || || || ||||||||| Sbjct 681 GTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCATA 633 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||| | || || |||||||| || || ||||| |||||||| || || Sbjct 632 CCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTA 573 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | ||||| | ||| || ||||| | || | | |||||| ||| ||| Sbjct 572 AGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGGGGA 513 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| || || || ||| ||| || |||| || || || || || Sbjct 512 ATACCTTCCTTATCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCTGATGGCTCAACG 453 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||| || || || || || || || || ||||||||| Sbjct 452 TCCAAAGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCATA 405 >seq533 Length=4588 Score = 107 bits (118), Expect = 1e-18 Identities = 169/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 15126 AACCATGTCTGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGT 15185 |||| || | |||||||| | ||| || || || || || || || |||||||| |||| Sbjct 4206 AACCTTGACCACCACCTCTAAGTCTCAAGACCAAGTGGAGAGTTGATTCTTTTTGGATGT 4265 Query 15186 TGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTT 15245 ||||||| | |||| ||||||| || | || ||||| | || | | |||| Sbjct 4266 TGTAATCAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTT 4325 Query 15246 GGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGC 15305 | || ||||| ||||||||||| ||| ||| ||| || |||| |||||||| Sbjct 4326 GATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTAACGTTTTCGATGGTATCAG 4385 Query 15306 TATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATAT 15365 | |||||||| | ||||| || ||||| |||| ||| || || || || | ||| | Sbjct 4386 AAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTCTTGACGAAGATCTACATTT 4445 Query 15366 TT 15367 || Sbjct 4446 TT 4447 >seq14202 Length=1113 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||||||| | ||| || |||||||| || |||||||| || ||||| || Sbjct 652 CCTCCTCTCAATCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGAATATTGTAGTCTGAA 593 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | ||||| | ||| ||||| ||| | || | | |||||| ||| ||| Sbjct 592 AGGGTTCTTCCATCTTCAAGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGATCGGGTGGG 533 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || |||||||| || || ||||| ||| || |||| ||||| || || || Sbjct 532 ATACCTTCTTTATCTTGGATCTTTGC-CTTAACGTTTTCAATGGTGTCTGATGGCTCGAC 474 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | ||| ||||| || || || || || || || || ||||||||| Sbjct 473 GTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCATA 425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362080069062978