Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq533 158 3e-33 seq18203 149 1e-30 seq14202 149 1e-30 seq4265 89.7 1e-12 seq16529 86.0 1e-11 >seq533 Length=4588 Score = 158 bits (174), Expect = 3e-33 Identities = 155/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||| || || || || ||||| | ||||| |||||||| | | |||||| Sbjct 4247 GTTGATTCTTTTTGGATGTTGTAATCAGACAAGGTTCTGCCGTCTTCCAACTACTTTCCA 4306 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || |||||||||||||| || || |||||||| || |||||||| || || Sbjct 4307 GCAAAGATGAGTCTCTGTTGATCAGGGGGAATACCTTCTTTGTCTTGAATCTTGGCCTTA 4366 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | |||||| ||| ||||| || || |||||||||||||| || | || Sbjct 4367 ACGTTTTCGATGGTATCAGAAGGCTCTACATCAAGAGTAATAGTCTTACCGGTCAAAGTC 4426 Query 104543 TTTACAAATATCTGCATTTT 104562 || || || |||| |||||| Sbjct 4427 TTGACGAAGATCTACATTTT 4446 >seq18203 Length=1365 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || || || | ||| | |||||||||||||| || || ||||| Sbjct 863 ATACCACCTCTCAATCTGAGGACCAAATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCT 804 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| || ||||| ||||| ||||| || || || || || |||||||| || Sbjct 803 GAAAGAGTTCTGCCATCTTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGTTGATCGGGT 744 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || || |||||||| || ||||| || | |||||| ||| || Sbjct 743 GGGATACCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAGGCTCG 684 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || ||||| || ||||| || || || || || ||||| Sbjct 683 ACGTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 634 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || || || | || | || || || || || || || |||||| Sbjct 635 ATACCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCA 576 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| || ||||| ||||| |||||||||||||| || || |||||||| || Sbjct 575 CTAAGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGATCGGGG 516 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| || ||||| || || || ||||| | || || || || Sbjct 515 GGAATACCTTCCTTATCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCTGATGGCTCA 456 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || ||||| ||||| || || || || || || ||||| Sbjct 455 ACGTCCAAAGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 406 >seq14202 Length=1113 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | ||||| || | || | ||||||||||| |||||||| ||||| Sbjct 655 ATACCTCCTCTCAATCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGAATATTGTAGTCT 596 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || ||||| || ||||| ||||| || || || || || || || |||||||| || Sbjct 595 GAAAGGGTTCTTCCATCTTCAAGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGATCGGGT 536 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||||||||| || |||||||| || || ||||| | ||| || || || Sbjct 535 GGGATACCTTCTTTATCTTGGATCTTTGCCTTAACGTTTTCAATGGTGTCTGATGGCTCG 476 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||| || ||||| || || || || || ||||| Sbjct 475 ACGTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCAT 426 Score = 138 bits (152), Expect = 3e-27 Identities = 173/236 (73%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || || | || | || | || || || ||||| || || ||||| Sbjct 427 ATACCTCCTCTGAGTCTCAAGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCG 368 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || ||||| |||||||| | || |||||||| ||||| || ||||||||||| || Sbjct 367 GAGAGGGTTCTGCCGTCTTCCAACTGCTTTCCAGCGAAAATGAGTCTCTGTTGATCGGGT 308 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| ||||| || || ||||| || || |||||||| | |||||| || || Sbjct 307 GGGATTCCCTCTTTGTCTTGGATCTTAGCCTTGACATTTTCAATGGTATCTGATGGCTCA 248 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT-TTTGT 104564 || || || || || ||||| ||||| || || || || || || | ||| ||||| Sbjct 247 ACATCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAAATTTACATGTTTGT 192 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || || || || | || | ||||| || || || || || ||||| Sbjct 880 CCACCTCTAAGTCTGAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTC 821 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | |||||| |||||||| |||||||| || || || || || || |||||||| || || Sbjct 820 AAAGTTCTGCCGTCTTCAAGTTGTTTACCGGCGAAGATGAGTCTTTGTTGATCGGGTGGA 761 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || ||||| ||||| ||||| ||||| || | ||| ||| ||||| || Sbjct 760 ATACCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCGGATGGTTCGACG 701 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || | || ||||||||||| || | || || || || |||| ||| Sbjct 700 TCCAAAGTGATAGTCTTACCGGTCAAGGTCTTCACGAAGATCTACAT 654 >seq4265 Length=1783 Score = 89.7 bits (98), Expect = 1e-12 Identities = 172/250 (69%), Gaps = 3/250 (1%) Strand=Plus/Plus Query 104311 GTCTTTCCATACTTTATTTATTCCCCCTCTTAGCCTAAGTACTA-GATGTAATGTAGATT 104369 ||||| |||| | |||| ||||| ||||||| ||||| || || | | |||||||| Sbjct 650 GTCTTAACATA-TATATTCATTCCTCCTCTTAATCTAAGGACAGTGAAG-ATTGTAGATT 707 Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 | || | |||| ||||| ||| |||| | || || | ||| ||| |||| | Sbjct 708 CCTTTTAAATACCGTAGTCTTATAAAGTTTTGCCAATCAAAAGCTCTTTACCACCAAAGA 767 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 |||| ||| | |||||||||||| ||||| ||||| |||| || ||| | | | | | Sbjct 768 TTAGTCTCAACTAATCAGGAGGTATACCTTCCTTATCTTGAAGTTTAGCTCTAATACTCT 827 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | | || || | ||| || ||||| || |||||| |||||| | | | || || Sbjct 828 CAATAGTCTCATTTTATTCAACTTCTAGAGTGATAGTCCGACCAGTTAAAGCCTATATAA 887 Query 104550 ATATCTGCAT 104559 | |||| ||| Sbjct 888 AAATCTACAT 897 >seq16529 Length=3212 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| |||||||| ||||| |||| ||| ||||||||||| || ||||| || || ||| Sbjct 2494 TCCACCTCTTAGTCTAAGAACTACATGCAATGTAGATTCCTTTTGAATGTTGTAATCACT 2435 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCT 104438 ||||| |||| | ||||| || ||||||||||| || | |||| Sbjct 2434 AAGAGTCTTACCCTTTTCTAATTACTTTCCAGCAAATATCAATCTCT 2388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151067093026264