Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oxytricha_20trifallax_20[genbank_20GCA_5F001297925.1_202015-09-23] 22,458 sequences; 57,457,034 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq18203 127 2e-24 seq14202 125 6e-24 seq533 116 3e-21 >seq18203 Length=1365 Score = 127 bits (140), Expect = 2e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || |||||||||| | |||||||| | || || |||||||| | ||| | Sbjct 640 TTTGCATACCACCTCTCAATCTGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGT 581 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || || | || | ||| || || || ||||| |||| || | |||||| |||| Sbjct 580 AGTCACTAAGGGTTCTTCCATCTTCAAGTTGCTTTCCAGCAAAAATGAGTCTTTGTTGAT 521 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | || ||||||||||| || || | || || ||||||||| | | |||||| | Sbjct 520 CGGGGGGAATACCTTCCTTATCTTGGATCTTGGCCTTGACGTTTTCAATAGTGTCTGATG 461 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || ||||| | |||||||| |||||||| || || ||||| ||||| ||||| Sbjct 460 GCTCAACGTCCAAAGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 406 Score = 122 bits (134), Expect = 8e-23 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || |||||||||| | ||||| || | ||||||||| || || | ||| | Sbjct 868 TTTGCATACCACCTCTCAATCTGAGGACCAAATGAAGAGTAGATTCTTTCTGGATGTTGT 809 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || | ||| || ||| || || || |||||| | ||||| | |||||| |||| Sbjct 808 AGTCTGAAAGAGTTCTGCCATCTTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGTTGAT 749 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | || || |||||||| ||||| | || ||||||||||| | | || || | Sbjct 748 CGGGTGGGATACCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTATCTGAAG 689 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||||||| | |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 688 GCTCGACGTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 634 >seq14202 Length=1113 Score = 125 bits (138), Expect = 6e-24 Identities = 170/235 (72%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 94775 TACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAA 94834 |||| ||||||||||||| | |||||||| | |||||||| ||||| | || || Sbjct 658 TACATACCTCCTCTCAATCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGAATATTGTAG 599 Query 94835 TCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 || | | || ||| ||| || || || || ||| | ||||| | |||||| |||| Sbjct 598 TC--TGAAAGGGTTCTTCCATCTTCAAGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGAT 541 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | || || ||||||||||| || | || |||||||| ||| | | ||||| | Sbjct 540 CGGGTGGGATACCTTCTTTATCTTGGATCTTTGCCTTAACGTTTTCAATGGTGTCTGATG 481 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||||||||| |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 480 GCTCGACGTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCAT 426 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | |||||||| | |||||| |||||||| | ||| || |||||| Sbjct 880 CCACCTCTAAGTCTGAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGCTC 821 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| || || || || ||||| ||| | ||||| | |||||| ||||| || ||| Sbjct 820 AAAGTTCTGCCGTCTTCAAGTTGTTTACCGGCGAAGATGAGTCTTTGTTGATCGGGTGGA 761 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| ||||| | || || || ||||| ||| ||||| | | |||||| Sbjct 760 ATACCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCGGATGGTTCGACG 701 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||| || || || || | || ||||| ||||||| ||| Sbjct 700 TCCAAAGTGATAGTCTTACCGGTCAAGGTCTTCACGAAGATCTACAT 654 >seq533 Length=4588 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || ||| |||||||| | ||| ||||| ||||| | ||| ||||| | Sbjct 4217 CCACCTCTAAGTCTCAAGACCAAGTGGAGAGTTGATTCTTTTTGGATGTTGTAATCAGAC 4276 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || || || |||| || ||||| ||||||| | ||| || ||||| || ||| Sbjct 4277 AAGGTTCTGCCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGGGGA 4336 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||||||||| | ||| || ||||| ||| ||| || |||| | || || Sbjct 4337 ATACCTTCTTTGTCTTGAATCTTGGCCTTAACGTTTTCGATGGTATCAGAAGGCTCTACA 4396 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || || || || || || | ||| || || ||||||| ||| Sbjct 4397 TCAAGAGTAATAGTCTTACCGGTCAAAGTCTTGACGAAGATCTACAT 4443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448165353452880